| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,090,592 – 14,090,690 |
| Length | 98 |
| Max. P | 0.840586 |
| Location | 14,090,592 – 14,090,690 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.30 |
| Shannon entropy | 0.53218 |
| G+C content | 0.45434 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -14.01 |
| Energy contribution | -12.76 |
| Covariance contribution | -1.26 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14090592 98 + 23011544 UUUUUGGUGAUGCAAACGAUGAUCGAUCGAACUAUUGUGCGAGGUCCAC---GACAAAAGGGCAAGAGUUCGCUCCUUCAGCGCAUUGAGAACAGCGAACC------ ((((..(((.(((......(((..((.((((((.((((.(...(((...---)))....).)))).)))))).))..)))))))))..)))).........------ ( -25.70, z-score = -0.26, R) >droSim1.chr2L 13844810 98 + 22036055 UUUUUGGUGAUGCAAACGAUGAUCGAUCGAACUAUUGUGCGAGGUCCAC---GACAAAAGGGCAAGAGUUCGCUCCUUCAGCGCAUUGAGAACAGCGAACC------ ((((..(((.(((......(((..((.((((((.((((.(...(((...---)))....).)))).)))))).))..)))))))))..)))).........------ ( -25.70, z-score = -0.26, R) >droSec1.super_3 348504 98 + 7220098 UUUUUGGUGAUGCAAACGAUGAUCGAUCGAACUAUUGUGCGAGGUCCAC---GACAAAAGGGCAAGAGUUCGCUCCUUCAGCGCAUUGAGAACAGCGAACC------ ((((..(((.(((......(((..((.((((((.((((.(...(((...---)))....).)))).)))))).))..)))))))))..)))).........------ ( -25.70, z-score = -0.26, R) >droYak2.chr2L 14184969 93 + 22324452 UUUUUGGUGAUGCAAACGAUGAUCGAUCGAACUAUUGCGCGAGGUCCAC---GAC--GAGGGCAAGAGUUCGCUCCUUCAGCGCAUUGAGAACAGCAA--------- ((((..(((.(((......(((..((.((((((.((((.(...(((...---)))--..).)))).)))))).))..)))))))))..))))......--------- ( -26.60, z-score = -0.26, R) >droEre2.scaffold_4929 15262313 100 - 26641161 UUUUUGGUGAUGCAAACGAUGAUCGAUCGAACUAUUGCGCGAGGUCCAGAGGGACA-GAGGGCAAGAGUUCGCUCCUUCAGCGCAUUGAGAACAGCGAGCC------ ((((..(((.(((......(((..((.((((((.((((.(...((((....)))).-..).)))).)))))).))..)))))))))..)))).........------ ( -32.80, z-score = -1.34, R) >droAna3.scaffold_12916 4491402 97 - 16180835 UUUUUGGUGAUGCAAACGAUGAUCGAACGAGCUAUUGUACGAGAGCCUA---GGCA-GCGGGCAAGAGUUCGUUCCUUCAACGCAUUGAGAACAGCGAUCC------ ((((..(((.......((.(((..(((((((((.(((..((...((...---.)).-.))..))).)))))))))..))).)))))..)))).........------ ( -29.91, z-score = -1.62, R) >droPer1.super_16 1384686 95 + 1990440 UUUUUGGUGAUGCAAACGAUGAUCGAGCGAAUUAUUGCGUG-GACCCAG---GUCU--CAGGCAAGAGCUCGCUCCUUUAUCGCAGUGAGAACAGCGAAAC------ .(((((.((...((..((((((..((((((....((((.((-(((....---))).--)).))))....))))))..))))))...))....)).))))).------ ( -34.50, z-score = -2.92, R) >droWil1.scaffold_180708 11145874 92 - 12563649 --UAAAGUUGCAAAAUCGAUAAUCGAUCGAACUAAUGUAUUCAAUCUAC---AGC--CAAUACAUGAGUUCGAUCUUUUAUUGCAUUGAGAACAGCAAA-------- --....((((...(((((((((..(((((((((.(((((((........---...--.))))))).)))))))))..)))))).))).....))))...-------- ( -26.10, z-score = -4.65, R) >droVir3.scaffold_12723 1204336 103 + 5802038 UUUUUGGUGAUGCAAACAAUGAUCGAUCGAUCUAUUGUCUAAGG---CACGAGAC-UCUAGGCAAAAGUUCGCUCUUUCAUUGCAUUGAGAACAGCGAAUGUAUCUA ........(((((.......((((....))))..(((((((..(---(....).)-..)))))))..(((((((.(((((......)))))..)))))))))))).. ( -27.20, z-score = -1.37, R) >droMoj3.scaffold_6500 22178948 107 - 32352404 UUUUUGGUGAUGCAAACAAUGAUCGAUCGAACUAUUGUUUGAUGCGCUGAGGCACAUUCAAGCAAAGGUUCGCUCCUUUAUUGGAUUGAGAACAGCGAAUGUAUCUA ........((((((..((((((..((.((((((.((((((((((.((....)).)).)))))))).)))))).))..))))))..(((.......))).)))))).. ( -32.60, z-score = -2.55, R) >droGri2.scaffold_15252 4610059 106 + 17193109 UUUUUGGUGAUGCAAACAAUGAUCGAUCGAUCUAUUGCCUGAAUACUCUCUGUAC-UCAAAGCAAAAGUUCGCUCAUUCAUUGCAUUGAGAACAGCGAAUGUAUCUA ........((((((..((((((((....)))).)))).........((.((((.(-((((.((((...............)))).))))).)))).)).)))))).. ( -26.16, z-score = -1.72, R) >consensus UUUUUGGUGAUGCAAACGAUGAUCGAUCGAACUAUUGUGCGAGGUCCAC___GACA_AAGGGCAAGAGUUCGCUCCUUCAGCGCAUUGAGAACAGCGAACC______ ..((((.((...(((.((.(((..((.(((.((.((((.(...................).)))).)).))).))..))).))..)))....)).))))........ (-14.01 = -12.76 + -1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:20 2011