| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,076,324 – 14,076,399 |
| Length | 75 |
| Max. P | 0.844335 |
| Location | 14,076,324 – 14,076,399 |
|---|---|
| Length | 75 |
| Sequences | 9 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 72.10 |
| Shannon entropy | 0.56129 |
| G+C content | 0.55077 |
| Mean single sequence MFE | -24.44 |
| Consensus MFE | -9.29 |
| Energy contribution | -8.81 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.77 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14076324 75 + 23011544 UUUUCAAUUGCCAUUUUU-GCCGCACGUGAGUGAGCUGCCGUCCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCA------- .................(-((((((((.((((.((((((.((.........)).)))))).)).)))).)))))))------- ( -28.90, z-score = -3.19, R) >anoGam1.chrX 18558067 82 + 22145176 ACAACCAGGGUCAUGUUC-GGAGGACGAGGAACGGCUGGUGCGUGACCUGUUUCGCGGUUACAACAAGCUCAUUCGCCCGGUA ...(((.((((....(((-(.....))))(((.((((.((..((((((........)))))).)).))).).)))))))))). ( -26.10, z-score = 0.08, R) >droPer1.super_16 1369339 71 + 1990440 --UUCAUUUGCCAUUUUA---CAUGCAUGAGUGGGCAACCGACCAAUUCCCACCUCAGGUCGCAUCCGCUGUGGCC------- --.......(((((....---.((((......((....))((((.............)))))))).....))))).------- ( -20.72, z-score = -1.49, R) >dp4.chr4_group4 1004571 71 - 6586962 --UUCAUUUGCCAUUUUA---CAUGCAUGAGUGGGCAACCGACCAAUUCCCACCUCAGGUCGCAUCCGCUGUGGCC------- --.......(((((....---.((((......((....))((((.............)))))))).....))))).------- ( -20.72, z-score = -1.49, R) >droAna3.scaffold_12916 4478136 76 - 16180835 UUUCCAAUUGAAAUUUUUUGCCCCACAUGAGUGAGUAACCAACCAAAUCCCACCGCAGCUCGCAUCCGCUGCGGCA------- .................((((..(((....))).))))..............(((((((........)))))))..------- ( -16.50, z-score = -1.89, R) >droEre2.scaffold_4929 15248131 75 - 26641161 UUUCCAAUUGCCAUUUUU-GCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCA------- .................(-((((((((.((((.((((((.(...........).)))))).)).)))).)))))))------- ( -27.50, z-score = -2.75, R) >droYak2.chr2L 14170244 75 + 22324452 GUUUCAAUUGCCAUUUUU-GCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCA------- .................(-((((((((.((((.((((((.(...........).)))))).)).)))).)))))))------- ( -27.50, z-score = -2.40, R) >droSec1.super_3 334374 75 + 7220098 UUUUCAAUUGCCAUUUUU-GCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCA------- .................(-((((((((.((((.((((((.(...........).)))))).)).)))).)))))))------- ( -27.50, z-score = -2.70, R) >droSim1.chr2L 13831015 75 + 22036055 UUUUCAAUUGCCAUUUUU-GCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCUUUGCGGCA------- .................(-((((((...((((.((((((.(...........).)))))).)).))...)))))))------- ( -24.50, z-score = -2.10, R) >consensus UUUUCAAUUGCCAUUUUU_GCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCA_______ ...................((((((...((((.(((.....................))).)).))...))))))........ ( -9.29 = -8.81 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:19 2011