| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,069,181 – 14,069,238 |
| Length | 57 |
| Max. P | 0.997854 |
| Location | 14,069,181 – 14,069,238 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 96.14 |
| Shannon entropy | 0.06770 |
| G+C content | 0.34386 |
| Mean single sequence MFE | -10.06 |
| Consensus MFE | -9.72 |
| Energy contribution | -10.12 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.49 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.997854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14069181 57 + 23011544 UAAGAACACGAAAUUAAAAGCAUUCCUUUAAUUUCCUGUUUUAAUUACCGCCAGCCU ..((((((.(((((((((........))))))))).))))))............... ( -10.70, z-score = -4.20, R) >droEre2.scaffold_4929 15241213 57 - 26641161 UAAGAACACGAAAUUAAAAGCACUCCUUUAAUUUCCUGUUUUAAUUACCGCCAGCCU ..((((((.(((((((((........))))))))).))))))............... ( -10.70, z-score = -4.17, R) >droYak2.chr2L 14163073 57 + 22324452 UAAGAACACGAAAUUAAAAGCACUCCUUUAAGGUCCUGUUUUAAUUACCGCCAGAGU ..((((((.((..(((((........)))))..)).))))))............... ( -7.50, z-score = -0.68, R) >droSec1.super_3 327317 57 + 7220098 UAAGAACACGAAAUUAAAAGCAUUCCUUUAAUUUCCUGUUUUAAUUACCGCCAGCCU ..((((((.(((((((((........))))))))).))))))............... ( -10.70, z-score = -4.20, R) >droSim1.chr2L 13823772 57 + 22036055 UAAGAACACGAAAUUAAAAGCAUUCCUUUAAUUUCCUGUUUUAAUUACCGCCAGCCU ..((((((.(((((((((........))))))))).))))))............... ( -10.70, z-score = -4.20, R) >consensus UAAGAACACGAAAUUAAAAGCAUUCCUUUAAUUUCCUGUUUUAAUUACCGCCAGCCU ..((((((.(((((((((........))))))))).))))))............... ( -9.72 = -10.12 + 0.40)
| Location | 14,069,181 – 14,069,238 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 96.14 |
| Shannon entropy | 0.06770 |
| G+C content | 0.34386 |
| Mean single sequence MFE | -12.78 |
| Consensus MFE | -12.82 |
| Energy contribution | -13.22 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14069181 57 - 23011544 AGGCUGGCGGUAAUUAAAACAGGAAAUUAAAGGAAUGCUUUUAAUUUCGUGUUCUUA .................((((.(((((((((((....))))))))))).)))).... ( -13.80, z-score = -2.62, R) >droEre2.scaffold_4929 15241213 57 + 26641161 AGGCUGGCGGUAAUUAAAACAGGAAAUUAAAGGAGUGCUUUUAAUUUCGUGUUCUUA .................((((.(((((((((((....))))))))))).)))).... ( -13.80, z-score = -2.32, R) >droYak2.chr2L 14163073 57 - 22324452 ACUCUGGCGGUAAUUAAAACAGGACCUUAAAGGAGUGCUUUUAAUUUCGUGUUCUUA .................((((.((..(((((((....)))))))..)).)))).... ( -8.70, z-score = 0.29, R) >droSec1.super_3 327317 57 - 7220098 AGGCUGGCGGUAAUUAAAACAGGAAAUUAAAGGAAUGCUUUUAAUUUCGUGUUCUUA .................((((.(((((((((((....))))))))))).)))).... ( -13.80, z-score = -2.62, R) >droSim1.chr2L 13823772 57 - 22036055 AGGCUGGCGGUAAUUAAAACAGGAAAUUAAAGGAAUGCUUUUAAUUUCGUGUUCUUA .................((((.(((((((((((....))))))))))).)))).... ( -13.80, z-score = -2.62, R) >consensus AGGCUGGCGGUAAUUAAAACAGGAAAUUAAAGGAAUGCUUUUAAUUUCGUGUUCUUA .................((((.(((((((((((....))))))))))).)))).... (-12.82 = -13.22 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:17 2011