| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,066,608 – 14,066,716 |
| Length | 108 |
| Max. P | 0.816638 |
| Location | 14,066,608 – 14,066,716 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.19 |
| Shannon entropy | 0.42978 |
| G+C content | 0.43676 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -16.90 |
| Energy contribution | -16.99 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14066608 108 + 23011544 -ACCCUGUCUGCCUGGCCAACGACUUGGUUUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCAACGGACAA-- -....((((((..(((((((....)))....((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).)))).)))))).-- ( -29.62, z-score = -1.86, R) >droGri2.scaffold_15252 4582193 96 + 17193109 -------------UUUGUG-CGACUUCGG-UGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUUCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCGCCAAACAAGC -------------((((.(-((((....)-)((((.((((((((.((((((.........(((......)))....)))))).)))))))).))))...)))))))..... ( -25.32, z-score = -1.14, R) >droMoj3.scaffold_6500 22140826 96 - 32352404 -------------UCUCUG-UGGCAACGC-UGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUUCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCAGCCGCCAAACAAGC -------------......-((((...((-(((((.((((((((.((((((.........(((......)))....)))))).)))))))).))))))).))))....... ( -30.32, z-score = -2.79, R) >droVir3.scaffold_12723 1163857 96 + 5802038 -------------UCUCUG-UGGCUUCGC-UGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUUCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCGCCAAACAAGC -------------......-((((...((-.((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).)).))))....... ( -25.72, z-score = -1.58, R) >droAna3.scaffold_12916 4466658 95 - 16180835 -----UCUGUGUCUGGCCAACGACUUGGCAUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCGACA----------- -----....((((..(((((....)))))..((((.((((((((.((((((.........(((......)))....)))))).)))))))).))))))))----------- ( -27.12, z-score = -2.14, R) >droWil1.scaffold_180708 11111666 108 - 12563649 CUGUUGGCCAUUGCCUUUGCUGCCUUCGC-UCGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUUCAGUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCGCCAAACAA-- .(((((((....(((.((((((..(((((-.......))))).))))))............((.....((((((...)))))).......))))).....))).)))).-- ( -27.10, z-score = -0.75, R) >droSim1.chr2L 13821169 108 + 22036055 -ACCCUGUCUCCCUGGCCAACGACUUGGUUUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCAACGGACAA-- -....(((((...(((((((....)))....((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).))))..))))).-- ( -27.02, z-score = -1.41, R) >droSec1.super_3 324727 108 + 7220098 -ACCCUGCCUCCCUGGCCAACGACUUGGUUUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCGCUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCAACGGACAA-- -..((.(((.....))).......(((((..((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).))))).))....-- ( -28.52, z-score = -1.42, R) >droYak2.chr2L 14160575 104 + 22324452 -----UCCCCGUCUGGCCAACGACUUGGUUGGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCAACGGACAA-- -----...((((.((((((((......))))((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).))))))))....-- ( -31.72, z-score = -2.50, R) >droEre2.scaffold_4929 15238613 104 - 26641161 -----CCCCUGUGUGGCCAACGACUUGGUUUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCAACGGACAA-- -----...((((.(((((((....)))....((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).))))))))....-- ( -25.72, z-score = -0.51, R) >dp4.chr4_group4 992463 106 - 6586962 -----UCUCUGUCUGGCCCAGGACUUGACUUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCGACAACAACAG -----....((((.(((..(((......)))((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).)))))))....... ( -24.82, z-score = -1.19, R) >droPer1.super_16 1357265 106 + 1990440 -----UCUCUGUCUGGCCCAGGACUUGACUUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCGACAACAACAG -----....((((.(((..(((......)))((((.((((((((.((((((.........(((......)))....)))))).)))))))).)))).)))))))....... ( -24.82, z-score = -1.19, R) >consensus _____UCUCUGUCUGGCCAACGACUUGGCUUGGCUUUGUGAAAUAGCAAUUACUUUUUCAUGCUCCACUGCAAUAAAAUUGCAAUUUUAUGCGGCCUGCCGACAAACAA__ ...............................((((.((((((((.((((((.........(((......)))....)))))).)))))))).))))............... (-16.90 = -16.99 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:14 2011