| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,058,591 – 14,058,693 |
| Length | 102 |
| Max. P | 0.668124 |
| Location | 14,058,591 – 14,058,693 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 63.03 |
| Shannon entropy | 0.72511 |
| G+C content | 0.46723 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -8.25 |
| Energy contribution | -8.29 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14058591 102 + 23011544 ------------AUUCCGUUUCUCCACAACCCAUUGCCCACUGCCCAGGAU---UCGUGUCUGG-UGAGCUGGUCGUUCAUUUUAUGCGACGACCAUCGCAUAAAUUUCACAAAAUUU ------------.......................(.(((((..(((((..---.....)))))-..)).))).)((....(((((((((......)))))))))....))....... ( -20.20, z-score = -0.36, R) >droSim1.chr2L 13815405 102 + 22036055 ------------AUUCCGGUCCUCCACAACCCAUUGCCCACUGCCCAGGAU---UCGUGUCUGG-UGAGCUGGUCGUUCAUUUUAUGCGACGACCAUCGCAUAAAUUUCACAAAAUUU ------------...((((..(.((..........((.....))...((((---....))))))-.)..))))..((....(((((((((......)))))))))....))....... ( -21.60, z-score = -0.20, R) >droSec1.super_3 316838 102 + 7220098 ------------AUUCCGGUCCUCCACAACCCAUUGCCCACUGCCCAGGAU---UCGUGUCUGG-UGAGCUGGUCGUUCAUUUUAUGCGACGACCAUCGCAUAAAUUUUACAAAAUUU ------------...((((..(.((..........((.....))...((((---....))))))-.)..))))..((....(((((((((......)))))))))....))....... ( -22.30, z-score = -0.56, R) >droYak2.chr2L 14152651 102 + 22324452 ------------AUUCCGGACCUCCACAACCCAUUGCCCACUGGCCAGGAU---UCGUGUCUGG-UGAGCUGGUCGUUCAUUUUAUGCGACGACCAUCGCAUAAAUUUCCCAAAAUUU ------------.....(((...............(.(((((.((((((..---.....)))))-).)).))).)......(((((((((......)))))))))..)))........ ( -25.40, z-score = -0.84, R) >droEre2.scaffold_4929 15229893 102 - 26641161 ------------GUUCCCGCCCUGCACAACCCAUUGCCCACUGGCCAGGAU---UCGUGUCUGG-UGAGCUGGUCGUUCAUUUUAUGCGACGGCCAUCGCAUAAAUUUCACAAAAUUU ------------.....((((..((((((.((...(((....)))..)).)---).))))..))-)).(((((((((((((...))).))))))))..)).................. ( -26.60, z-score = -0.55, R) >droAna3.scaffold_12916 4459019 87 - 16180835 -----------------------UUUCUCCUCCUCCUCCGUUGGCCAAGAC---UCGAGUCAG----AGCUGGUCGUUCAUUUUAUGCGACGACCAUCGCAUAAAUUUCACAAAAUU- -----------------------...................(((((.(.(---((......)----))))))))((....(((((((((......)))))))))....))......- ( -20.70, z-score = -2.15, R) >dp4.chr4_group4 984215 90 - 6586962 -------------------------ACGCUUUGCCUCCAUUUAGGCAGAAC---CCGCGUCUGAACUCGCUGGUCGUUCAUUUUAUGCGACCACCAUCGCAUAAAUUUCAUAAAAUUU -------------------------(((.(((((((......)))))))((---(.(((........))).))))))....(((((((((......)))))))))............. ( -24.10, z-score = -3.39, R) >droPer1.super_16 1347698 90 + 1990440 -------------------------ACGCUUUGCCUCCAUUUACGCUGAAC---CCGCGUCUGAACUCGCUGGUCGUUCAUUUUAUGCGACGACCAUCGCAUAAAUUUCAUAAAAUUU -------------------------.....................(((((---(((((........))).))..))))).(((((((((......)))))))))............. ( -18.10, z-score = -1.25, R) >droVir3.scaffold_12723 4650636 104 - 5802038 -------CCCCGCUGCCACCCUGUAUCCUAGUAGUAUGAAAUGUGCGAAAA---UGGCGUCCA--UUUGAUGCACAC--AAUUUGUGCGGCGGCAAUCGCAUAAAUUUCAUAAAAUUU -------....((((((...(((.....)))..(((..((.((((((.(((---(((...)))--)))..)))))).--..))..)))))))))........................ ( -27.70, z-score = -1.52, R) >droMoj3.scaffold_6500 10223811 95 + 32352404 --------------UCCCGCCCAGCCUCCUACG----GAAAUAUUCGAAAA---UGGCGUCCA--UUUUAUGCACACACAACUCGUGCGGCGGCUAGCGCAUAAAUUUCAUAAAAUUU --------------...(((..((((.((..((----((....))))((((---(((...)))--))))..((((.........)))))).)))).)))................... ( -22.70, z-score = -1.37, R) >droGri2.scaffold_15252 12620276 114 - 17193109 CACCAACCCCCCCACCCCCUUUGGCUGUGUGCGCUAUGAAAUGUGCGAAAGAUGUGCCGUCUA--UUUUAUGCACAC--AACUCGUGUGGCGACCAUCGCAUAAAUUUCAUAAAAUUU (((((.((..............)).)).)))...((((((((((((((.(((((...))))).--.....(((((((--.....)))).)))....))))))..))))))))...... ( -24.74, z-score = -0.95, R) >consensus _____________UUCCGGUCCUCCACAACCCAUUGCCCACUGCCCAGGAU___UCGCGUCUGG_UGAGCUGGUCGUUCAUUUUAUGCGACGACCAUCGCAUAAAUUUCACAAAAUUU .................................................................................(((((((((......)))))))))............. ( -8.25 = -8.29 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:13 2011