| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,017,555 – 14,017,661 |
| Length | 106 |
| Max. P | 0.881846 |
| Location | 14,017,555 – 14,017,661 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.94 |
| Shannon entropy | 0.59192 |
| G+C content | 0.52764 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -14.06 |
| Energy contribution | -15.40 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14017555 106 - 23011544 UAUUAGUUCUACACUUCUCCCUUGAAGUUCUCUCCAUUCACCCGCUUUUACUUAAGAGGACGUGCCCGCAUGGCGUGUCCUGGCUCUGCUCCUAGUCGUGGUCCUG ...(((..(((((((((......)))))............................((((((((((.....))))))))))((((........))))))))..))) ( -26.10, z-score = -1.39, R) >droEre2.scaffold_4929 15188563 101 + 26641161 -CCUAGUUCCGCACUUAUCUCUUUG----CUCCCCAUUCACCCGCUUUUACUUAAGAGGACGUGCCCGCAUGGCGUGUCCUGGCUGUGCUCCUCGUCGUGGUCCUG -..(((..((((......(((((.(----(.............))........)))))((((.(...(((((((........)))))))..).))))))))..))) ( -25.02, z-score = -0.96, R) >droYak2.chr2L 14110116 94 - 22324452 --------CUCCAGUUCCCUCUUCA----CUUCCCAUUCACCCGCUUUUACUUAAGAGGACGUGCCCGCAUGGCGUGUCCUGGCUCUGCUCCUAGUCGUGAUCCUG --------..............(((----(..........................((((((((((.....))))))))))((((........))))))))..... ( -20.10, z-score = -0.65, R) >droSec1.super_3 274555 103 - 7220098 CCUUAGUUCUGCACUUCUCCCUUUUA---CUCCCCAUUCACCCGCUUUUACUUAAGAGGACGUGCCCGCAUGGCGUGUCCUGGCUCUGCUCCUAGUCGUGGUCCUG ...(((..(..(..............---...........................((((((((((.....))))))))))((((........)))))..)..))) ( -21.50, z-score = -0.29, R) >droSim1.chr2L 13774044 103 - 22036055 CCUUAGUUCUGCACUUCUCCCUUUUA---CUCCCCAUUCACCCGCUUUUACUUAAGAGGACGUGCCCGCAUGGCGUGUCCUGGCUCUGCUCCUAGUCGUGGUCCUG ...(((..(..(..............---...........................((((((((((.....))))))))))((((........)))))..)..))) ( -21.50, z-score = -0.29, R) >droWil1.scaffold_180708 11044169 97 + 12563649 GUCUAGUUUUACUUGAUAUUUUUACAUUGAAAGCCUGACACACACGCUAGCCAAAUA---UCUCCUAGAAAAUCCCGAUGUGUUUACUCCUUGGCUCGUG------ (((..(((((...((.((....))))...)))))..)))...((((..(((((((((---((..............))))).........))))))))))------ ( -16.94, z-score = -1.29, R) >consensus _CUUAGUUCUGCACUUCUCCCUUUAA___CUCCCCAUUCACCCGCUUUUACUUAAGAGGACGUGCCCGCAUGGCGUGUCCUGGCUCUGCUCCUAGUCGUGGUCCUG .........................................((((...........((((((((((.....))))))))))((((........))))))))..... (-14.06 = -15.40 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:11 2011