| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,013,368 – 14,013,471 |
| Length | 103 |
| Max. P | 0.723880 |
| Location | 14,013,368 – 14,013,471 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.10 |
| Shannon entropy | 0.42204 |
| G+C content | 0.33025 |
| Mean single sequence MFE | -27.16 |
| Consensus MFE | -9.14 |
| Energy contribution | -8.66 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14013368 103 - 23011544 UAAUCCUAUCAGUAGUAACGCGAUCUCAUAGGGGAUCAUUUUCUAUAAGUGGUGGUACUUAAAAAUAGCGUAGAAAACUAGCAU-------------AUCUUCUAGUUAUUGUUUA--- .........((((....((((((((((....))))))........((((((....))))))......))))....((((((...-------------.....))))))))))....--- ( -20.50, z-score = -1.00, R) >droSim1.chr2L 13769841 113 - 22036055 AAAUCUUAUC---AGUAACACGAUCUCAUAGGGGAUCAUUUUCUAUGA---GUGGUACUUAAAAAUAGCAGAGAAAACUAGCAUUAAUAUAUGCUAGAUAUGCUAGUUAUUGUCUAAGA ...(((((.(---((((((((.(.(((((((..((...))..))))))---)).)).........(((((.......(((((((......)))))))...))))))))))))..))))) ( -34.50, z-score = -4.56, R) >droSec1.super_3 270351 112 - 7220098 AAAUCUUAUC---AGUAACACGAUCUCAUAGGGGAUCAUUUUCUAUGA---GUGGUACUUAAAAAUAGCAGAGAAAACUAGCAUUAA-GUAUGCUAGAUAUGCUAGUUAUUGUCUAAGA ...(((((.(---((((((((.(.(((((((..((...))..))))))---)).)).........(((((.......(((((((...-..)))))))...))))))))))))..))))) ( -34.30, z-score = -4.29, R) >droYak2.chr2L 14105821 100 - 22324452 AAAUCCUCGC---AGUAACACGAUCUCAUAGGGGAUCAUUGUGAAUGA---GUGGUACUUAUAAAUAGCGGAAAAACCUAACAU-------------AUCAUUUAGUUAAUGUUUAUGA ...(((((((---(((.....((((((....)))))))))))))((((---(.....))))).......))).........(((-------------(.((((.....))))..)))). ( -20.50, z-score = -0.98, R) >droEre2.scaffold_4929 15184432 100 + 26641161 AAGUGCUCUC---AGUAACAUGAUCUCAUAGGGGAUCAUUUUAUUCGA---GUGGUACUUAAAAUAGUUUGAGAAACGUAACAC-------------AUCUUCCAGUUAAUAGUUCUGA ((((((((((---(((((.((((((((....)))))))).))))).))---).)))))))...........((((...((((..-------------........))))....)))).. ( -26.00, z-score = -2.50, R) >consensus AAAUCCUAUC___AGUAACACGAUCUCAUAGGGGAUCAUUUUCUAUGA___GUGGUACUUAAAAAUAGCAGAGAAAACUAGCAU_____________AUCUUCUAGUUAUUGUUUAAGA .............((((.(((((((((....)))))).((......))...))).))))............................................................ ( -9.14 = -8.66 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:10 2011