Locus 1803

Sequence ID dm3.chr2L
Location 14,010,554 – 14,010,646
Length 92
Max. P 0.955972
window2481 window2482

overview

Window 1

Location 14,010,554 – 14,010,646
Length 92
Sequences 12
Columns 105
Reading direction forward
Mean pairwise identity 84.17
Shannon entropy 0.33138
G+C content 0.45240
Mean single sequence MFE -24.30
Consensus MFE -21.74
Energy contribution -21.67
Covariance contribution -0.08
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.58
SVM RNA-class probability 0.951775
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 14010554 92 + 23011544
-------------AGUUCCUCAAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGGUGAAAGU
-------------......(((..((((((((((((.......)))))..((((((((.....))))..))))...............)))))))...))).... ( -23.20, z-score =  -1.21, R)
>droEre2.scaffold_4929 15181501 90 - 26641161
---------------GUCCCCUAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGGUGAAGGU
---------------.((.(((..((((((((((((.......)))))..((((((((.....))))..))))...............)))))))))).)).... ( -24.70, z-score =  -1.39, R)
>droYak2.chr2L 14102776 90 + 22324452
---------------UUUCCCGAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGGUGAAAGU
---------------((((((...((((((((((((.......)))))..((((((((.....))))..))))...............))))))).)).)))).. ( -25.90, z-score =  -2.35, R)
>droSec1.super_3 267495 91 + 7220098
--------------AUUUCCCACAGGUUCUACCGAGACUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGGUGAAAGU
--------------.((((((...((((((((((((.......)))))..((((((((.....))))..))))...............))))))).)).)))).. ( -25.10, z-score =  -2.10, R)
>droSim1.chr2L 13766961 91 + 22036055
--------------AUUUUCCACAGGUUCUACCGAGACUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGGUGAAAGU
--------------((((((.((.((((((((((((.......)))))..((((((((.....))))..))))...............)))))))..)))))))) ( -24.80, z-score =  -1.98, R)
>dp4.chr4_group4 913088 105 - 6586962
ACUAAAAAGUUUGCAUCGACAUCAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGUUGACUGG
.............(((((((....((((((((((((.......)))))..((((((((.....))))..))))...............))))))).))))).)). ( -25.10, z-score =  -1.17, R)
>droPer1.super_16 1273088 105 + 1990440
ACUAAAAAGUUUGCAUCGACAUCAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGUUGACUGG
.............(((((((....((((((((((((.......)))))..((((((((.....))))..))))...............))))))).))))).)). ( -25.10, z-score =  -1.17, R)
>droWil1.scaffold_180708 11034907 91 - 12563649
--------------UUCCACCUUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGUUGUCAGC
--------------..........((((((((((((.......)))))..((((((((.....))))..))))...............))))))).......... ( -22.10, z-score =  -1.56, R)
>droVir3.scaffold_12723 1062357 88 + 5802038
-------------AUUUCACUCAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCGGUUGA----
-------------...........((((((((((((.......)))))..((((((((.....))))..))))...............)))))))......---- ( -22.10, z-score =  -1.28, R)
>droMoj3.scaffold_6500 22042048 91 - 32352404
--------------UCUUCGACUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCGGUUGAAUGU
--------------..(((((((.((((((((((((.......)))))..((((((((.....))))..))))...............))))))))))))))... ( -28.30, z-score =  -2.71, R)
>droGri2.scaffold_15252 4508651 89 + 17193109
--------------AAUCACU--AGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCGGUUGGCUAC
--------------..(((..--.((((((((((((.......)))))..((((((((.....))))..))))...............)))))))...))).... ( -22.50, z-score =  -1.26, R)
>anoGam1.chr3L 13298801 92 - 41284009
---------AUUGCUUACGGAAGAGGUUCUACCGAGAUUUGAACUCGGAUCGUUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCCGUUGA----
---------........(....).((((((((((((.......)))))....((((((.....))))))...................)))))))......---- ( -22.70, z-score =  -0.99, R)
>consensus
______________AUUCACCAAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAAAGUGCUAACCAUUACACCAUAGAACCAGUUGAAAGU
........................((((((((((((.......)))))..((((((((.....)))))..)))...............))))))).......... (-21.74 = -21.67 +  -0.08)

alignment

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secondary structure

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dotplot

Postscript

Window 2

Location 14,010,554 – 14,010,646
Length 92
Sequences 12
Columns 105
Reading direction reverse
Mean pairwise identity 84.17
Shannon entropy 0.33138
G+C content 0.45240
Mean single sequence MFE -26.96
Consensus MFE -24.48
Energy contribution -24.48
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.62
SVM RNA-class probability 0.955972
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 14010554 92 - 23011544
ACUUUCACCUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUUUGAGGAACU-------------
..(((((...(((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))..)))))....------------- ( -26.90, z-score =  -1.55, R)
>droEre2.scaffold_4929 15181501 90 + 26641161
ACCUUCACCUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUUAGGGGAC---------------
...(((.((((((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))..)))))).--------------- ( -27.70, z-score =  -1.35, R)
>droYak2.chr2L 14102776 90 - 22324452
ACUUUCACCUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUUCGGGAAA---------------
...(((.((.(((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))...))))).--------------- ( -27.80, z-score =  -1.93, R)
>droSec1.super_3 267495 91 - 7220098
ACUUUCACCUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAGUCUCGGUAGAACCUGUGGGAAAU--------------
..(..(((..(((((((((((((........)))))((((((((.((.((....)))).))))))))......)))))))).)))..)...-------------- ( -30.10, z-score =  -2.28, R)
>droSim1.chr2L 13766961 91 - 22036055
ACUUUCACCUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAGUCUCGGUAGAACCUGUGGAAAAU--------------
..((((((..(((((((((((((........)))))((((((((.((.((....)))).))))))))......)))))))).))))))...-------------- ( -30.30, z-score =  -2.71, R)
>dp4.chr4_group4 913088 105 + 6586962
CCAGUCAACUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUGAUGUCGAUGCAAACUUUUUAGU
...(((.((.(((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))....)).))).............. ( -26.70, z-score =  -0.75, R)
>droPer1.super_16 1273088 105 - 1990440
CCAGUCAACUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUGAUGUCGAUGCAAACUUUUUAGU
...(((.((.(((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))....)).))).............. ( -26.70, z-score =  -0.75, R)
>droWil1.scaffold_180708 11034907 91 + 12563649
GCUGACAACUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUAAGGUGGAA--------------
..(.((....(((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))....)).)..-------------- ( -25.70, z-score =  -1.10, R)
>droVir3.scaffold_12723 1062357 88 - 5802038
----UCAACCGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUUGAGUGAAAU-------------
----((((..(((((((((((((........)))))((((((((.((.((....)))).))))))))......)))))))))))).......------------- ( -25.60, z-score =  -1.85, R)
>droMoj3.scaffold_6500 22042048 91 + 32352404
ACAUUCAACCGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUAGUCGAAGA--------------
...(((.((.(((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))..)).)))..-------------- ( -25.70, z-score =  -1.40, R)
>droGri2.scaffold_15252 4508651 89 - 17193109
GUAGCCAACCGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCU--AGUGAUU--------------
.....((...(((((((((((((........)))))((((((((.((.((....)))).))))))))......)))))))).--..))...-------------- ( -25.10, z-score =  -1.44, R)
>anoGam1.chr3L 13298801 92 + 41284009
----UCAACGGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAACGAUCCGAGUUCAAAUCUCGGUAGAACCUCUUCCGUAAGCAAU---------
----.....((((((((((((((........)))))((((((((.((.((....)))).))))))))......)))))))))..............--------- ( -25.20, z-score =  -1.70, R)
>consensus
ACUUUCAACUGGUUCUAUGGUGUAAUGGUUAGCACUUUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUAGAACCUGAGGGGAAU______________
..........(((((((((((((........)))))((((((((.((.((....)))).))))))))......))))))))........................ (-24.48 = -24.48 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:09 2011