| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,976,629 – 13,976,737 |
| Length | 108 |
| Max. P | 0.652748 |
| Location | 13,976,629 – 13,976,737 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 59.82 |
| Shannon entropy | 0.80884 |
| G+C content | 0.38261 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -7.61 |
| Energy contribution | -7.41 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13976629 108 - 23011544 --UACAUAGAGAUCAAAGCUGAA-UUUUACAAGAUUUCUGCUCUUUCCAUAAUGUCACACAUCCA-AUGCCUUUGGGUGUGUCUGGGUUUUUUUAUGCUACUCGUCGACUUC --....((((((((.........-........)))))))).............((((((((((((-(.....))))))))))..((((...........))))...)))... ( -23.73, z-score = -1.22, R) >droAna3.scaffold_12916 4378436 102 + 16180835 -CUGCGAAGAAGGGUAGAAACA--CUCAACAUCAUAAUGAAAAUGGCACUGUUUGCCCAAAUUUGGGUGUUCGUAGCCUUGUUAGAACUUUAUCAUCUAUCUGGC------- -........((((.((..((((--((((((((....))).....((((.....)))).....)))))))))..)).))))((((((.............))))))------- ( -22.82, z-score = -0.38, R) >droEre2.scaffold_4929 15147391 108 + 26641161 --UACAGAGUUAGCUAAGCUGAA-UUUAAUAAGUUCUCUGGUAUUUCCAAAAUGUCACACAUCCG-AUGUCUUUGGGUGUGUCUAAGUGUUUUAAUGGUUCUCGUCGACUGC --..((((((((((...))))).-...........))))).............((((((((((((-(.....))))))))))............(((.....))).)))... ( -21.40, z-score = -0.14, R) >droYak2.chr2L 14068183 108 - 22324452 --UACAGAUAUUGCCAAGCUUAA-UUUCAUAAGUUUCCUUCUAUUUCCAUAAUGUUACACAUCCG-AUGCCUUUGGGUGUGUCUCAGUUAUUCAAUGGUUCUCGUCGGCUUC --..........((((((((((.-.....)))))))....(((((...((((((..(((((((((-(.....))))))))))..)).))))..)))))........)))... ( -25.40, z-score = -3.07, R) >droSec1.super_3 233503 108 - 7220098 --UACAGAGAUAUCAAAGUUGAG-UUUCACCAGAUUUCUGCUAUUUCCAUAAUGCCACACAUCCA-AUGUCUUUGGGUGUGUCUGGUGUUUUUAAUGCUACUCGUCGACUUC --......(((......((((((-...(((((((.....((.(((.....)))))..((((((((-(.....))))))))))))))))..)))))).......)))...... ( -27.52, z-score = -1.97, R) >droSim1.chr2L 13732800 108 - 22036055 --UACAGAGAUAUCAAAGUUGAG-UUUCACCAGAUUUCUGCUAUUUCCAUAAUGCCACACAUCCA-AUGUCUUUGGGUGUGUCUGGUGUUUUUAAUGCUACUCGUCGACUUC --......(((......((((((-...(((((((.....((.(((.....)))))..((((((((-(.....))))))))))))))))..)))))).......)))...... ( -27.52, z-score = -1.97, R) >droMoj3.scaffold_6500 14117580 112 - 32352404 AACAUUUAUAUACUAAAUAUAAACUCCCACAUACUUUCAUACAUGUUUUUAAUGAUACAAAUUUACGGAAUUCUCUAUUAGUUUUGGUGAGCUCAGGCGUUCAGUUUGCUUC ....(((((((.....)))))))((((((...(((......(((.......)))............(((....)))...)))..))).)))..(((((.....))))).... ( -11.60, z-score = 1.08, R) >consensus __UACAGAGAUAGCAAAGCUGAA_UUUCACAAGAUUUCUGCUAUUUCCAUAAUGUCACACAUCCA_AUGUCUUUGGGUGUGUCUGGGUUUUUUAAUGCUUCUCGUCGACUUC ........................................................(((((((((........))))))))).............................. ( -7.61 = -7.41 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:06 2011