| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,275,910 – 1,276,003 |
| Length | 93 |
| Max. P | 0.847140 |
| Location | 1,275,910 – 1,276,003 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 60.83 |
| Shannon entropy | 0.79595 |
| G+C content | 0.50213 |
| Mean single sequence MFE | -23.97 |
| Consensus MFE | -7.40 |
| Energy contribution | -9.77 |
| Covariance contribution | 2.37 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1275910 93 + 23011544 --UGCUAUAACGAUGGAGCCCAGUUGAGAACGAGACGGGCA-GAAAGUGUGCAACACUAUCGAAUGUGGCGCCUCCAAACAGGGGGAGCUGAAAGG --.((((((.((((((.((((.(((........))))))).-....((.....)).))))))..)))))).(((((.....))))).......... ( -29.90, z-score = -2.16, R) >droSim1.chr2L 1248566 93 + 22036055 --UGCUAUAACGAUGGAGCCCAGUUGCGAACGAGAUGGGCA-GAAAGUGUGCAACACUAUCGAAUGUGGCGCCUCCAAACAGAGGGAGCUGAAAGG --.((((((.((((((.(((((.(((....)))..))))).-....((.....)).))))))..))))))((..((.......))..))....... ( -28.50, z-score = -1.75, R) >droSec1.super_14 1226416 93 + 2068291 --UGCUAUAACGAUGGAGCCCAGUUGCGAACGAGAUGGGCA-GUAAGUGUGCAACACUAUCGACUAUGGCGCCUCCAAACAGAGGGAGCUGAAAGG --.((((((.((((((.(((((.(((....)))..))))).-(((....)))....))))))..))))))((..((.......))..))....... ( -28.90, z-score = -1.65, R) >droYak2.chr2L 1251736 74 + 22324452 --UGCUAUAACGAUGGAGCCCCG--------------------AAAGUGUGCAACACUAUCGAAUGUGGCGCCUCAAAACAGAGGGAGCUGAAAGG --.((((((.((((((.(((.(.--------------------...).).))....))))))..)))))).((((......))))........... ( -20.50, z-score = -1.49, R) >droEre2.scaffold_4929 1316630 93 + 26641161 --UGCUACAACGAUGGAGCCCAGUUGCGAACGAGAGGGGCA-GAAAGCGUGCAACACUAUCGAAUGUGGCGCCUCAAAACAGGGCGAGCUGAAAGG --.((((((.((((((.((((..(((....)))...)))).-....(....)....))))))..))))))((((.......))))........... ( -27.30, z-score = -0.60, R) >droAna3.scaffold_12916 4738429 77 + 16180835 UACUUCACUACUAGGGAGUCCUGCCAAAAAGGCGGUGUCCCUAAAAGUAUGCAACACUAUCAAAUGCUGCUCCCUCG------------------- ......(((..((((((..((.(((.....)))))..))))))..)))..(((.((........)).))).......------------------- ( -19.90, z-score = -2.30, R) >dp4.chr4_group3 9749388 81 + 11692001 -----UACUACGACGAAAGCGAA---AAAACUCCAGAGCCU--AAAACAC-UAUUUUUUUCAGGAAAAACCUCUUUAAUAGGGGGCGAAAAU---- -----.....((.(....)))..---...........((((--......(-((((......(((.....)))....))))).))))......---- ( -12.80, z-score = -0.66, R) >consensus __UGCUAUAACGAUGGAGCCCAGUUGAGAACGAGAUGGGCA_GAAAGUGUGCAACACUAUCGAAUGUGGCGCCUCCAAACAGAGGGAGCUGAAAGG ...(((((..((((((.((((...............))))......((.....)).))))))...))))).((((......))))........... ( -7.40 = -9.77 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:10 2011