| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,941,173 – 13,941,242 |
| Length | 69 |
| Max. P | 0.650414 |
| Location | 13,941,173 – 13,941,242 |
|---|---|
| Length | 69 |
| Sequences | 8 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 85.76 |
| Shannon entropy | 0.27607 |
| G+C content | 0.51018 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -15.19 |
| Energy contribution | -15.86 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13941173 69 + 23011544 GAAUUCGAGUUCGUUGCCUGAGUCUUUUGUUUCGCUGGACGUUCGCUGGACGCCGGUGAAAGGAUUCGC (((((((((((((.....)))).)))...(((((((((.((((.....))))))))))))))))))).. ( -24.30, z-score = -1.47, R) >droSim1.chr2L 13695326 62 + 22036055 GAAUUCGAGUUCGUUGCCUGAGUCUUUUGUUUCG-------UUCGCUGGACGCAGGUGAAAGGAUUCGC .....(((((((.(..((((.((((..((.....-------..))..)))).))))..)..))))))). ( -21.20, z-score = -2.03, R) >droSec1.super_3 198375 62 + 7220098 GAAUUCGAGUUCGUUGCCUGAGUCUUUUGUUUCG-------UUCGCUGGACGCAGGUGAAAGGAUCCGC .....((..(((.(..((((.((((..((.....-------..))..)))).))))..)..)))..)). ( -17.40, z-score = -0.48, R) >droYak2.chr2L 14025099 62 + 22324452 GAAUUCGAGUUCGUUGCCUGAGUCUUUUGUUUCG-------UUCGCUGGACGCAGGUGAAAGGAUCCGC .....((..(((.(..((((.((((..((.....-------..))..)))).))))..)..)))..)). ( -17.40, z-score = -0.48, R) >droEre2.scaffold_4929 15109617 62 - 26641161 GAAUUAGAGUUCGUUGCCUGAGUCUUUUGUUUCG-------UUCGCUGGACGCAGGUGAAAGGAUUCGC ......((((((.(..((((.((((..((.....-------..))..)))).))))..)..)))))).. ( -20.20, z-score = -2.02, R) >droAna3.scaffold_12916 4343148 69 - 16180835 GGAUUCGAGUUCGUUGCCUAAGUCUUUUGUUUCGUUCGCUGAAUGCUGGAUGCAGGUGAAAGGAUUCGC .....(((((((.(..(((..((((..(((((.(....).)))))..))))..)))..)..))))))). ( -18.30, z-score = -0.61, R) >dp4.chr4_group4 834216 59 - 6586962 GGACUCGGGUUCGUUGCCUGAGUCUUUUGUUUCGUU----------UGGAGGCAGGUGAAAGGAUUCGC ((((((((((.....)))))))))).(((((((...----------..)))))))(((((....))))) ( -22.40, z-score = -2.93, R) >droPer1.super_16 1188878 59 + 1990440 GGACUCGGGUUCGUUGCCUGAGUCUUUUGUUUCGUU----------UGGAGGCAGGUGAAAGGAUUCGC ((((((((((.....)))))))))).(((((((...----------..)))))))(((((....))))) ( -22.40, z-score = -2.93, R) >consensus GAAUUCGAGUUCGUUGCCUGAGUCUUUUGUUUCG_______UUCGCUGGACGCAGGUGAAAGGAUUCGC .....(((((((.(..((((.((((......................)))).))))..)..))))))). (-15.19 = -15.86 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:02 2011