| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,919,429 – 13,919,529 |
| Length | 100 |
| Max. P | 0.949656 |
| Location | 13,919,429 – 13,919,529 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.88 |
| Shannon entropy | 0.39861 |
| G+C content | 0.46998 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -14.63 |
| Energy contribution | -14.85 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13919429 100 + 23011544 CCCACUUUAUUUAACCCACUCUG--UAAAUUGCCG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU-GUGGUCGCUGCAACAGGC--GGGCAG--- ..............(((.(.(((--(....(((.(--(((((((...))))))((...(((((((((.....))))..))-))).)))).)))))))).--)))...--- ( -27.40, z-score = -1.51, R) >droSim1.chr2L 13673220 100 + 22036055 CCCACUUUAUUUAACCCACUCUG--CAAAUUGCCG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU-GUGGUCGCUGCAACAGGC--GGCCAG--- .......................--(((.((((..--(((((((...))))))).....)))).))).............-.((((((((......)))--))))).--- ( -28.40, z-score = -2.16, R) >droSec1.super_3 176699 100 + 7220098 CCCACUUUAUUUAACCCACUCUG--CAAAUUGCCG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU-GUGGUCGCUGCAACAGGC--GGCCAG--- .......................--(((.((((..--(((((((...))))))).....)))).))).............-.((((((((......)))--))))).--- ( -28.40, z-score = -2.16, R) >droEre2.scaffold_4929 15087997 99 - 26641161 CCCACUUUAUUUAACCCACUCUG--CAAAUUGCAG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU-GUGGUCGCUGCAACAGGC--GGCCA---- ......................(--(((((((((.--(((((((...)))))))....)))))((((.....)))).)))-))(((((((......)))--)))).---- ( -30.70, z-score = -2.72, R) >droYak2.chr2L 14003064 99 + 22324452 CCCACUUUAUUUAACCCACUCUG--CAAAUUGCAG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU-GUGGUCGCUGCAACAGGC--GGCCA---- ......................(--(((((((((.--(((((((...)))))))....)))))((((.....)))).)))-))(((((((......)))--)))).---- ( -30.70, z-score = -2.72, R) >droAna3.scaffold_12916 4321557 99 - 16180835 CCCACUUUAUUUAACCCACUCUG--CAAAUUGCAG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCAAAUCUUU-GUGGUCGCUGGAACAAGC--CACCU---- .......................--(((.(((((.--(((((((...)))))))....))))).))).............-..(((.(((......)))--.))).---- ( -25.20, z-score = -2.36, R) >dp4.chr4_group4 806493 105 - 6586962 CCCACUUUAUUUAACCCACUCUG--CAAAUUGCAG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU-GUGGUCGAUGCAACAGCCCGGGUCGGCCA ......................(--(((((((((.--(((((((...)))))))....)))))((((.....)))).)))-))(((((((.(........).))))))). ( -30.50, z-score = -1.91, R) >droWil1.scaffold_180708 10900290 101 - 12563649 CCCACUUUAUUUAACCCACUCUGUGCAAAUUGCUGA-CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCAAAUCUUUUGUGGUUGGC-CAGCAAAA---ACCA---- .............................((((((.-(((((((...)))))))..............(((((.........)))))...-))))))..---....---- ( -21.30, z-score = -0.89, R) >droVir3.scaffold_12723 890264 98 + 5802038 -----CCCACUUAGCUGACU--G---AAAUUGCAGCAUGGCUUCAAUGAAGCCGAAA-UGCAAAUUGAAACCUAAUCUUC-AUACACAACCCGCCAACACAGUCGAGCCG -----........(((((((--(---...(((((...(((((((...)))))))...-)))))..((((........)))-).................))))).))).. ( -25.80, z-score = -4.18, R) >droGri2.scaffold_15252 4400961 96 + 17193109 -----CCCACUUAACGGACU--G---AAAUUGCAGCAUGGCUUCAAUGAAGCCGAAA-UGCAAAUUGAAACCUAAUCUUA-AUACUC--CCCGUCGACUCCGACAAGCCG -----.........(((.((--.---...(((((...(((((((...)))))))...-))))).................-......--...((((....)))).))))) ( -23.30, z-score = -3.85, R) >droPer1.super_16 1159181 105 + 1990440 CCCACUUUAUUUAACCCACUCUG--CAAAUUGCAG--CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU-GUGGUCGAUGCAACAACCCGGGUCGGCCA ......................(--(((((((((.--(((((((...)))))))....)))))((((.....)))).)))-))(((((((.(........).))))))). ( -30.50, z-score = -2.40, R) >consensus CCCACUUUAUUUAACCCACUCUG__CAAAUUGCAG__CGGCUUCAAUGAAGCCGAAAAUGCAAAUUGAAACCCAAUCUUU_GUGGUCGCUGCAACAGGC__GGCCAG___ ...............((((..........((((....(((((((...))))))).....))))((((.....)))).....))))......................... (-14.63 = -14.85 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:00 2011