| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,891,948 – 13,892,042 |
| Length | 94 |
| Max. P | 0.817768 |
| Location | 13,891,948 – 13,892,042 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.61 |
| Shannon entropy | 0.42271 |
| G+C content | 0.52158 |
| Mean single sequence MFE | -29.98 |
| Consensus MFE | -21.69 |
| Energy contribution | -24.00 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13891948 94 - 23011544 --CCCAGUUACUGGCUAUCGGCCAGGAGAUGAUGGCCUAGAUGACGAUGAUGAUGAUGAUGCGGCU---------GCUGCAUCACGUUCUGCCAUAAUGGCCAAC --..((....(((((.....)))))....)).(((((...(((.((.....((((.((((((((..---------.)))))))))))).)).)))...))))).. ( -31.80, z-score = -1.59, R) >droSim1.chr2L 13644149 96 - 22036055 GACCCAGUUACUGGCUAUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUGCGGCU---------GCUGCAUCACGUUCUGCCAUAAUGGCCAAC ...........(((((((((((((........))))))).......(((..((..(((((((((..---------.)))))))))..))...)))..)))))).. ( -35.10, z-score = -2.05, R) >droSec1.super_3 148980 96 - 7220098 GACCCAGUUACUGGCUAUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUGCGGCU---------GCUGCAUCACGUUCUGCCAUAAUGGCCAAC ...........(((((((((((((........))))))).......(((..((..(((((((((..---------.)))))))))..))...)))..)))))).. ( -35.10, z-score = -2.05, R) >droYak2.chr2L 10298378 105 - 22324452 GACCCAGUUACUGGCCAUUCGCCAGGAGAUGAUGGCCGAGAUGAUGAUGAUGAUGGUGGUGCGACUGCUGCUGUUGCUGCAUCACGUACUGCAAUAAUGGCCAAC ....((....(((((.....)))))....)).((((((..((.((....)).)).(..(((((..(((.((....)).)))...)))))..).....)))))).. ( -33.40, z-score = -0.97, R) >droEre2.scaffold_4929 15060360 90 + 26641161 GACCCAGUUACUGGCUUUCGGCCAGGAGAUGAUGGCCGAGAUGAUGAUGACGA------UGCGGCU---------GCUGCAUCACGUUCUGCCAUAAUGGCCAAC ...(((.(((.(((((((((((((........)))))))))..........((------(((((..---------.))))))).......))))))))))..... ( -31.60, z-score = -1.86, R) >droWil1.scaffold_180708 10860422 89 + 12563649 GGCCCAGUGAUUGGCUUUCGGCCAAAGAAGGAGAACAAAAAAAUUCACAACAA-------ACUUUU---------ACUGCAUCACGUUUUGUCGUCAUAACCUUU ((..(((((((((((.....))))).......(((........))).......-------....))---------))))..))..(((.((....)).))).... ( -12.90, z-score = 0.94, R) >consensus GACCCAGUUACUGGCUAUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUGCGGCU_________GCUGCAUCACGUUCUGCCAUAAUGGCCAAC ....((....(((((.....)))))....)).((((((..(((.....((((....(((((((((..........)))))))))))))....)))..)))))).. (-21.69 = -24.00 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:57 2011