Locus 1792

Sequence ID dm3.chr2L
Location 13,835,541 – 13,835,661
Length 120
Max. P 0.988845
window2466

overview

Window 6

Location 13,835,541 – 13,835,661
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Shannon entropy 0.04419
G+C content 0.46000
Mean single sequence MFE -35.78
Consensus MFE -33.72
Energy contribution -33.92
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -2.80
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.34
SVM RNA-class probability 0.988845
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 13835541 120 - 23011544
UACUACGAAACCAACAGAAAAGUGCGAGAAUUUACGUCGAGCGCAGCCGAGUAUGUAAAAGUAUGUAGUUGGUGCGAGGCGUUCCACAACAAACUGUGGAUGAAGAGCAGGUACAGUGGU
.(((((...(((.((......))((........(((((...((((.((((.((((((....)))))).)))))))).)))))((((((......))))))......)).)))...))))) ( -37.50, z-score =  -2.97, R)
>droSim1.chr2L 13596643 120 - 22036055
UACUACGAAACCAACAGAAAAGUGCGAGAAUUUACGUCGAGCGCAGCCGAGUAUGUAAAAGUAUGUAGUUGGUGCGAGGCGUUCCACAACAAACUGUGGAAGAAUAGCAGGUACAGUGGU
.(((((...(((.((......))((.........((((...((((.((((.((((((....)))))).)))))))).))))(((((((......))))))).....)).)))...))))) ( -37.70, z-score =  -3.24, R)
>droSec1.super_3 102164 120 - 7220098
UACUACGAAAUCAACAGAAAAGUGCGAGAAUUUACGUCGAGCCCAGCCGAGUAUGUAAAAGUAUGUAGUUGGUGCGAGGCGUUCCACAACAAACUGUGGAAGAAGAGCAGGUACAGUGGU
.(((((....((....))...((((.........((((..(((((((...((((......))))...))))).))..))))(((((((......))))))).........)))).))))) ( -34.20, z-score =  -2.52, R)
>droYak2.chr2L 10250692 120 - 22324452
UACUACGAAACCAACAGAAAAGUGCGAGAAUUUACGUCGAGCGCAGACGAGUAUGUAAAAGUAUGUAGUUGGUGCGAGGCGUUCCACAACAAACUGUGGAAGAAGAGCAGGUACAGUGAU
...(((...(((.((......))((.........((((..((((.(((..((((......))))...))).))))..))))(((((((......))))))).....)).)))...))).. ( -31.20, z-score =  -1.87, R)
>droEre2.scaffold_4929 15013262 120 + 26641161
UACUACGAAAUCAACAGAAAAGUGCGAGAAUUUACGUCGAGCGCAGCCGAGUAUGUAAAAGUAUGUAGUCGGUGCGAGGCGUUCCACAACAAACUGUGGAAGAAGAGCAGGUACAGUGGU
.(((((....((....))...((((.........((((...((((.((((.((((((....)))))).)))))))).))))(((((((......))))))).........)))).))))) ( -38.30, z-score =  -3.43, R)
>consensus
UACUACGAAACCAACAGAAAAGUGCGAGAAUUUACGUCGAGCGCAGCCGAGUAUGUAAAAGUAUGUAGUUGGUGCGAGGCGUUCCACAACAAACUGUGGAAGAAGAGCAGGUACAGUGGU
.(((((...(((.((......))((........(((((...((((.((((.((((((....)))))).)))))))).)))))((((((......))))))......)).)))...))))) (-33.72 = -33.92 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:55 2011