| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,827,776 – 13,827,826 |
| Length | 50 |
| Max. P | 0.828278 |
| Location | 13,827,776 – 13,827,826 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 74.43 |
| Shannon entropy | 0.47649 |
| G+C content | 0.39606 |
| Mean single sequence MFE | -7.25 |
| Consensus MFE | -6.32 |
| Energy contribution | -5.88 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13827776 50 - 23011544 ---AAUUU--GAAUUAAAUCAAUGUGACCGCCGCGCAAGCGCACAAAAAUACCUA ---...((--((......))))((((.....(((....))))))).......... ( -9.00, z-score = -1.50, R) >droAna3.scaffold_12916 4230634 50 + 16180835 AACUAAUUGGCUGUAAACAAAGUGUGACC-UUAUUCUGAAAAACAAAUCUA---- .........(((........)))......-.....................---- ( -1.00, z-score = 1.68, R) >droEre2.scaffold_4929 15005412 52 + 26641161 ---AAUUUAAAAAUGAAAUCAAUGUGACCGCCGCGCAAGCGCACAAAAAUACCUA ---...................((((.....(((....))))))).......... ( -8.40, z-score = -1.47, R) >droYak2.chr2L 10243040 51 - 22324452 ---AAUUU-GAAAUGAAAUCAAUGUGACCGCCGCGCAAGCGCACAAAAAUACCUA ---...((-((.......))))((((.....(((....))))))).......... ( -8.50, z-score = -1.10, R) >droSec1.super_3 94318 50 - 7220098 ---AAUUU--GAAUUAAAUCAAUGUGACCGCCGCGCAAGCGCACGAAAAUACCUC ---...((--((......))))((((.....(((....))))))).......... ( -8.30, z-score = -0.90, R) >droSim1.chr2L 13588812 50 - 22036055 ---AAUUU--GAAUUAAAUCAAUGUGACCGCCGCGCAAGCGCACGAAAAUACCUC ---...((--((......))))((((.....(((....))))))).......... ( -8.30, z-score = -0.90, R) >consensus ___AAUUU__GAAUUAAAUCAAUGUGACCGCCGCGCAAGCGCACAAAAAUACCUA ......................((((.....(((....))))))).......... ( -6.32 = -5.88 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:54 2011