| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,812,992 – 13,813,106 |
| Length | 114 |
| Max. P | 0.751177 |
| Location | 13,812,992 – 13,813,106 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 67.21 |
| Shannon entropy | 0.67794 |
| G+C content | 0.56569 |
| Mean single sequence MFE | -38.96 |
| Consensus MFE | -17.76 |
| Energy contribution | -19.87 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.52 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13812992 114 - 23011544 UAACCUGCCAAA-GGCGCCUCUCGAAUUGCAGCUGGCCAAAGCCCGAGCGAAUCGUGCACUCGAGCUGGUCAGGAGCAAGGAGAAGGCUGCUUUGGAACGGACCGAAUCCUCGCC ...((..(((((-(..(((((((...((((..(((((((..((.((((.(.......).)))).)))))))))..)))).))).))))..))))))...))..(((....))).. ( -42.80, z-score = -0.95, R) >droSim1.chr2L 13572799 115 - 22036055 UAACCUGCCCAAGGGCGCCUCUCGAAUUGCAGCUGGCCAAAGCCCGAGCGGAUCGGGAGCUCGAGCUGGUCAGGAGCAAGCAGAAGGCUGCUUUGGAACGAACCGAAUCCUCACC ......(((....)))((((.((...((((..(((((((..((.(((((.........))))).)))))))))..))))...))))))...(((((......)))))........ ( -42.70, z-score = -0.30, R) >droSec1.super_3 78496 114 - 7220098 UAACCUGCCCAA-GGCGCCUCUCGAAUUGCAGCUGGCCAAAGCCCGAGCGGAUCGGGAGCUCGAGCUGGUCAGGAGCAAGCAGAAGGCUGCUUUGGAACGAACCGAAUCCUCACC ........((((-(((((((.((...((((..(((((((..((.(((((.........))))).)))))))))..))))...)))))).)))))))................... ( -45.10, z-score = -1.27, R) >droYak2.chr2L 10224871 114 - 22324452 CAGCCAGCCCAA-GGCGCCCUUUGAAGUGCAGCUGGCCAAAGCCCGAGCGGAUCGUGCCCUCGAGCUGGUCAGGAGCACGCAGAAGGCUGCUUUGGAAGAGGCCGCUUCGUCACC ..(((...((((-((((.(((((...((((..(((((((..((.((((.((......)))))).)))))))))..))))...))))).))))))))....)))............ ( -50.50, z-score = -1.37, R) >droEre2.scaffold_4929 14988145 114 + 26641161 UAGGGUUCCCAA-GGCACCUUUUGAAGUGCAGCUGGCCAAAGCCCGAGUGGAUCGGGCCAUCGAGCUGGUCAGGAGCAAGCAGAAGGCUGCUUUGGAACAGGCCGAAUUGUCACC ..(((((((.((-(((((((((((...(((..(((((((..((((((.....))))))........)))))))..)))..))))))).))))))))))).(((......))).)) ( -50.00, z-score = -2.77, R) >droAna3.scaffold_12916 4214388 114 + 16180835 GAGCCUGUCCAA-AACUCCUACUGAGAUAAAGCUUGCUGAAGAACGGGCCAGUCGUGCCAGUCAAAUGGUCUCAAGCAACCAAAAGAAGGCAUUGGAAAAGUCCUUGGUGAGUCC ............-..(((.....))).....(((..(..(.((.....(((...(((((..((...((((........))))...)).)))))))).....)).)..)..))).. ( -24.40, z-score = 1.22, R) >droWil1.scaffold_180772 7128285 93 - 8906247 CGGAUUAGAAAA-GACACCAAUUGAAAUACAAUUGGCCACAAAUCGAGCCGAACAAGCCUUGCACUUGGCC---AACAUUCAAAAUGCACCAGUUCA------------------ .((....((...-....(((((((.....))))))).......))...))((((..(((........))).---..(((.....))).....)))).------------------ ( -17.24, z-score = -0.96, R) >consensus UAGCCUGCCCAA_GGCGCCUCUUGAAUUGCAGCUGGCCAAAGCCCGAGCGGAUCGGGCCCUCGAGCUGGUCAGGAGCAAGCAGAAGGCUGCUUUGGAACAGACCGAAUCCUCACC ........((((.((((.((.((...((((..(((((((..((.((((...........)))).)))))))))..))))...)).)).))))))))................... (-17.76 = -19.87 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:52 2011