| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,812,356 – 13,812,478 |
| Length | 122 |
| Max. P | 0.975931 |
| Location | 13,812,356 – 13,812,478 |
|---|---|
| Length | 122 |
| Sequences | 5 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 82.20 |
| Shannon entropy | 0.29055 |
| G+C content | 0.35428 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -16.97 |
| Energy contribution | -18.21 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13812356 122 + 23011544 GGUAAGUUUGUCAGCUAAAGUUGGUUUGUAAAUGGUGCAGGAAAUCCAAU--------CUAUCAUUGCAUCAUCUACGAACAAACCUACAACUCUUUCAAACUAACCAUUUUUUUUGUUCAUUCAAACAG (((.((((((.((((....))))(((((((.(((((((((((........--------...)).))))))))).)))))))................)))))).)))........((((......)))). ( -31.00, z-score = -4.39, R) >droSim1.chr2L 13572164 120 + 22036055 GGUAAGUUUGUCAGCUAAA-UUAGCUUGUAAAUGGUGCAGGAAAUCCAAU--------CUAUCAUUGUACCAUCUACGAACAAAUCUACAAAUCUUUCAAACUAACCAUUUUUUU-GUUCAUUCAAACAG (((.((((((...((((..-.))))(((((.(((((((((((........--------...)).))))))))).)))))..................)))))).))).......(-(((......)))). ( -26.50, z-score = -4.04, R) >droSec1.super_3 77861 120 + 7220098 GGUAAGUUUGUCAGCUAAA-UUAGCUUGUAAAUGGUGCAGGAAAUCCAAU--------CUAUCAUUGUACCAUCUACGAACAAAUCUACAAAUCUUUCAAACUAACCAUUUUUUU-GUUCAUUCAAACAG (((.((((((...((((..-.))))(((((.(((((((((((........--------...)).))))))))).)))))..................)))))).))).......(-(((......)))). ( -26.50, z-score = -4.04, R) >droYak2.chr2L 10224235 123 + 22324452 GGUGAGUUUGUCACUUAAAGCU-GCUUAUAAAUGGUGCAGGAAAUCCGAUUCAAAACAUUAUCACUGCCC-AUUUACGAAGAUAUCUACAGCUCCUUGAAACUAAACAUUUU----GUCCAUU-AAACAG (((((.....)))))...((((-(.(..(((((((.(((((....))(((..........)))..)))))-)))))..)((....)).)))))...................----.......-...... ( -20.60, z-score = -0.17, R) >droEre2.scaffold_4929 14987507 124 - 26641161 GGUGAGUUUGUUACCUAAAGCU-GCUUGUAAAUGGUGCAGGAAAUCCGAUUCAAAACACUAUCACUGCCCCAUUUACGAAGAGACCUACAGCACUGUGAAACUAACCAUUUU----GUCCAUU-AAACAG (((.((((..((((.....(((-(.((((((((((.(((((....))(((..........)))..))).))))))))))((....)).))))...)))))))).))).....----.......-...... ( -27.70, z-score = -1.41, R) >consensus GGUAAGUUUGUCAGCUAAAGUU_GCUUGUAAAUGGUGCAGGAAAUCCAAU________CUAUCAUUGCACCAUCUACGAACAAAUCUACAACUCUUUCAAACUAACCAUUUUUUU_GUUCAUUCAAACAG (((.((((((...((((....))))(((((.(((((((((((...................)).))))))))).)))))..................)))))).)))....................... (-16.97 = -18.21 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:51 2011