| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,774,947 – 13,775,056 |
| Length | 109 |
| Max. P | 0.677065 |
| Location | 13,774,947 – 13,775,056 |
|---|---|
| Length | 109 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 84.22 |
| Shannon entropy | 0.34264 |
| G+C content | 0.45548 |
| Mean single sequence MFE | -30.06 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.60 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13774947 109 + 23011544 --UUUGACAUGGU-UGCGAAUCGGUUUACCUCAUCGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGCUUGGUCUUGCGACUCACAUUGCCCUCGAUGAUAAUCUGAUA--GCA--- --........(((-((((((((((...((((....)))).))))))).......(((((((....))).))))...)))))).....(((..(((((....))).))..--)))--- ( -30.80, z-score = -1.61, R) >droSim1.chr2L 13534155 109 + 22036055 --UUUGACAUGGU-UGCGAAUCGGUUUACCUCAUCGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGCUUGGUCUUGCGACUAACAUUGCCCUCGAUGAUAAUCUGAUA--GCA--- --.......((((-((((((((((...((((....)))).))))))).......(((((((....))).))))...)))))))....(((..(((((....))).))..--)))--- ( -32.60, z-score = -2.32, R) >droSec1.super_3 40769 109 + 7220098 --UUUGACAUGGU-UGCGAAUCGGUUUACCUCAUCGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGCUUGGUCUUGCGACUAACAUUGCCCUCGAUGAUAAUCUGAUA--GCA--- --.......((((-((((((((((...((((....)))).))))))).......(((((((....))).))))...)))))))....(((..(((((....))).))..--)))--- ( -32.60, z-score = -2.32, R) >droYak2.chr2L 10186657 109 + 22324452 --UUUGACAUGGU-UGCGAAUCGGUUUACCUCAUCGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGCUUGGUCUUGCGACUAACAUUGCCCUCGAUGAUGAUCUGAUA--GCA--- --.......((((-((((((((((...((((....)))).))))))).......(((((((....))).))))...)))))))....(((..(((((....))).))..--)))--- ( -31.90, z-score = -1.82, R) >droEre2.scaffold_4929 14949852 109 - 26641161 --UUUGACAUGGU-UGCGAAUCGGUUUACCUCAUCGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGCUUGGUCUUGCGACUAACAUUGCCCUCGAUGAUAAUCUGAUA--GCA--- --.......((((-((((((((((...((((....)))).))))))).......(((((((....))).))))...)))))))....(((..(((((....))).))..--)))--- ( -32.60, z-score = -2.32, R) >droAna3.scaffold_12943 1852323 111 + 5039921 --UUUGACAUGGU-UGCGAAUCGGUUUACCUCAGCGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGCUUGGUCUUGCGACUAACAUUGCCCUCGAUGAUGAUCUGAUGUGGCA--- --.......((((-((((((((((...((((....)))).))))))).......(((((((....))).))))...)))))))....((((((((((....))).)).).))))--- ( -34.60, z-score = -1.70, R) >dp4.chr4_group4 624174 107 - 6586962 --UUUAAGCUUGU-UGCGAAUCGGUUUACCUCAUGGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCUUUUGGUUUUGCGACUGACGUUCCCUUCGAUGAUGAUCUGC----GCA--- --.....((....-.))(((((((...((((....)))).)))))))......(((..((((..((....))..))))((..(.((((......)))).)..)).))----)..--- ( -29.00, z-score = -1.26, R) >droPer1.super_16 929470 107 + 1990440 --UUUAAGCUUGU-UGCGAAUCGGUUUACCUCAUGGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCUUUUGGUUUUGCGACUGACGUUCCCUUCGAUGAUGAUCUGC----GCA--- --.....((....-.))(((((((...((((....)))).)))))))......(((..((((..((....))..))))((..(.((((......)))).)..)).))----)..--- ( -29.00, z-score = -1.26, R) >droWil1.scaffold_180764 3907638 103 - 3949147 ----UUUGUUGUGGG-CGAAUCGGUUUACCUCAAUGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGUUUAGUCUUACGACUCACAUUACCCUCGAUGAUGAUCUGAU--------- ----...((((((((-((((((((...((((....)))).)))))))..((((((..(....)..))))))))).))))))(((((((......)))).)))......--------- ( -28.10, z-score = -1.73, R) >droVir3.scaffold_12723 705669 111 + 5802038 UCAGUCAAAUGUUUUGCGAAUCGGUUUACCUCAACGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGUUUGGUCUUGCGACUUACAUUGCCCUCGAUGAUGAUCUAUAUAG------ ..((((....((((...(((((((...((((....)))).)))))))...))))....((((..((....))..))))))))..(((((....))))).............------ ( -28.70, z-score = -1.78, R) >droGri2.scaffold_15252 4247092 111 + 17193109 UCAGUUUAAUGUUUU-CGAAUCGGUUUACCUCAGCGGGUUCCGAUUCCUUAAACGCUAGCGAUUUCGUUUGGUCUUGCGACUCACAUUGCCUUCAAUGAUGAUCUAAAAUGG----- ...(((...(((((.-.(((((((...((((....)))).)))))))...)))))..)))(((((((((.(((..((.......))..)))...))))).))))........----- ( -25.90, z-score = -0.90, R) >droMoj3.scaffold_6500 29223905 109 + 32352404 --------AUGGUGUACGAAUCGGUUCACCUCAGCGGGUUCCGAUUCCUUAAACGCUAGCGAUUCCGUUUGGUCUUACGGCUGACAUUUCCUUCGAUGAUAAUCUGGAUAGAUAUAG --------.((((((..(((((((...((((....)))).))))))).....)))))).....((((.(..(((....)))..)).........(((....))).)))......... ( -24.90, z-score = 0.67, R) >consensus __UUUGACAUGGU_UGCGAAUCGGUUUACCUCAUCGGGUUCCGAUUCUUUAAACGCUAGCGAUUCCGCUUGGUCUUGCGACUAACAUUGCCCUCGAUGAUGAUCUGAUA__GCA___ .................(((((((...((((....)))).)))))))...........((((..((....))..))))......((((......))))................... (-20.64 = -20.60 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:50 2011