| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,763,337 – 13,763,421 |
| Length | 84 |
| Max. P | 0.510058 |
| Location | 13,763,337 – 13,763,421 |
|---|---|
| Length | 84 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 59.53 |
| Shannon entropy | 0.75969 |
| G+C content | 0.37480 |
| Mean single sequence MFE | -14.42 |
| Consensus MFE | -6.37 |
| Energy contribution | -6.65 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13763337 84 - 23011544 ---GUGUGUUGUUU-GAGUGUAGCAGUUAUCAUUCUUCUAACUAAAAAGUGAUGGUCA--AUUAAAGUUACCGCCGCUAGGUGGAGCUUU ---....((..(((-.(((.(((.((........)).))))))...)))..)).....--...((((((.(((((....))))))))))) ( -18.00, z-score = -0.60, R) >droEre2.scaffold_4929 14936546 88 + 26641161 GAGAGUUGUUGUUUCAAAUGUAGUGAUUAUCAAUAUUUUAAAUAAAAAGUUAUGGUCA--AUCAAUGUUACCGCCGCUAGGUGGAGCUGU ...((((...........((...(((((((.(((.((((....)))).))))))))))--..))......(((((....))))))))).. ( -16.20, z-score = -0.74, R) >droYak2.chr2L 10174996 84 - 22324452 ---CCGUGUUGUUU-GAGUGU--CAGUAAAAGCUAAAAGUAUUAAAAUGUAGUGAUUAUGAUUCUUCUUACCACCGCUAGGUGGAGCUGC ---....(((....-(((.((--((.(((..((((...((......)).))))..))))))).)))....(((((....))))))))... ( -15.70, z-score = -0.26, R) >droSec1.super_3 29019 68 - 7220098 -----------------GUGU---GUUGUUUGUUCUUCUAACUAAAAAGUGAUGGUCA--AUCAAUGUUACCGCCGCUAGGUGGAGCUGU -----------------....---((((.(((..((....(((....)))...)).))--).))))(((.(((((....))))))))... ( -14.60, z-score = -0.96, R) >droSim1.chr2L 13522431 68 - 22036055 -----------------GUGU---GUUGUUUGUUCUUCUAACUAAAAAGUGAUGGUCA--AUCAAUGUUACCGCCGCUAGGUGGAGCUGU -----------------....---((((.(((..((....(((....)))...)).))--).))))(((.(((((....))))))))... ( -14.60, z-score = -0.96, R) >droAna3.scaffold_12943 1839844 78 - 5039921 ----CAAAUUUUUUAUGGGCUUACGAUA-----UAUAGUUAUUCAAAAGGAAUGGCCAGAAUAAAUUAUA-CAC--UUUGAUGAAUCUUU ----...((..(((((.(((..((....-----....))(((((.....))))))))...)))))..)).-...--.............. ( -7.40, z-score = 0.77, R) >consensus ______UGUUGUUU__AGUGU__CGAUAAUCGUUAUUCUAACUAAAAAGUGAUGGUCA__AUCAAUGUUACCGCCGCUAGGUGGAGCUGU ......................................................................(((((....)))))...... ( -6.37 = -6.65 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:47 2011