Locus 1783

Sequence ID dm3.chr2L
Location 13,747,739 – 13,747,830
Length 91
Max. P 0.999801
window2455 window2456

overview

Window 5

Location 13,747,739 – 13,747,830
Length 91
Sequences 9
Columns 96
Reading direction forward
Mean pairwise identity 78.58
Shannon entropy 0.43367
G+C content 0.35477
Mean single sequence MFE -21.86
Consensus MFE -16.49
Energy contribution -16.80
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -2.33
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.73
SVM RNA-class probability 0.994698
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 13747739 91 + 23011544
GUUGACUUUAACUGGAGAUUCUUAAAGUAGUACAUCAAAAGGUUGAUUUGC-----AUGUUGAGAACAACCCUUUAAUGGAUACUACUUAAGGAAG
.....((((....)))).(((((.(((((((((((.(((.(((((.(((..-----......))).))))).))).)))..)))))))).))))). ( -20.70, z-score =  -1.79, R)
>droSim1.chr2L 13506676 91 + 22036055
GUUGACUUUGACUGUAGAUUCCUAAAGUAGUACAUCAAACGGUUGAUUUGC-----AUGUUGAGAACAACCCUUUAAUGGAUACUACUUAAGGAAG
..................(((((.(((((((((((.(((.(((((.(((..-----......))).))))).))).)))..)))))))).))))). ( -23.00, z-score =  -2.56, R)
>droSec1.super_3 14603 91 + 7220098
GUUGACUUUGACUGUAGAUUCCUAAAGUAGUACAUCAAACGGUUGAUUUGC-----AUGUUGAGAACAACCCUUUAAUGGAUACUACUUAAGGAAG
..................(((((.(((((((((((.(((.(((((.(((..-----......))).))))).))).)))..)))))))).))))). ( -23.00, z-score =  -2.56, R)
>droYak2.chr2L 10160058 90 + 22324452
GUUGACUUUGACUGGAGAUUCCUAAAGUAGUAAAUCAAAAGGUUGAUCUU------AUUGUGACCACAACCCUUUAAUGGAUACUACUUAAGGAAG
.....((((....)))).(((((.((((((((.((.(((.(((((.((..------.....))...))))).))).))...)))))))).))))). ( -21.00, z-score =  -1.70, R)
>droEre2.scaffold_4929 14922150 90 - 26641161
GUUGACUUUGACUGGAGAUUCUUAAAGUAGUACAUUAAACGGUCGAUUCA------AUUGUGACCACAACCCUUUAAUGGAUACUACUUAAGGAAG
.....((((....)))).(((((.(((((((((((((((.(((.(..(((------....)))...).))).)))))))..)))))))).))))). ( -21.00, z-score =  -1.87, R)
>droAna3.scaffold_12943 1815546 90 + 5039921
GCCGACUUUAAAUGGAGCUACCUAAAGUAGUACAUCAAACGGUCACUUUG------AAUAUAUUAACGACCCUUUAAUGGAUACUACUUAAGGAAA
.(((........))).....(((.(((((((((((.(((.((((...(((------(.....)))).)))).))).)))..)))))))).)))... ( -18.90, z-score =  -2.32, R)
>droPer1.super_5 3483604 89 + 6813705
GUUGACUUCGACUGUGCUUUUU-AAAGUAGUACAUCAAAAGGUCGAUUUU------AGCUAGAUGACGACCUCUUAAUGGAUACUACUUAAGGAAG
((((....))))....((((((-.(((((((((((.((.((((((((((.------....))))..)))))).)).)))..)))))))).)))))) ( -23.30, z-score =  -2.41, R)
>dp4.chr4_group1 3555999 90 - 5278887
GUUGACUUUGACUGUGCUUUUUUAAAGUAGUACAUCAAAAGGUCGAUUUU------AGCUAGAUGACGACCUCUUAAUGGAUACUACUUAAGGAAG
................(((((((((.(((((((((.((.((((((((((.------....))))..)))))).)).)))..))))))))))))))) ( -20.80, z-score =  -1.71, R)
>droWil1.scaffold_180772 8360837 96 - 8906247
GUUGAUUUCAGAAACACAUUCUGCAAGUAGUAACUUAAAGGAUCGACUUUAAAAGAAUUGGACAAACGACCCUUUAAAGGUUACUACUUAAAGAAU
.................(((((..(((((((((((((((((.(((..(((((.....)))))....))).))))))..)))))))))))..))))) ( -25.00, z-score =  -4.09, R)
>consensus
GUUGACUUUGACUGGAGAUUCUUAAAGUAGUACAUCAAAAGGUCGAUUUG______AUUUUGAGAACAACCCUUUAAUGGAUACUACUUAAGGAAG
..................(((((.(((((((((((.(((.(((((.....................))))).))).)))..)))))))).))))). (-16.49 = -16.80 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 13,747,739 – 13,747,830
Length 91
Sequences 9
Columns 96
Reading direction reverse
Mean pairwise identity 78.58
Shannon entropy 0.43367
G+C content 0.35477
Mean single sequence MFE -25.97
Consensus MFE -19.25
Energy contribution -18.58
Covariance contribution -0.67
Combinations/Pair 1.30
Mean z-score -4.76
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 4.43
SVM RNA-class probability 0.999801
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 13747739 91 - 23011544
CUUCCUUAAGUAGUAUCCAUUAAAGGGUUGUUCUCAACAU-----GCAAAUCAACCUUUUGAUGUACUACUUUAAGAAUCUCCAGUUAAAGUCAAC
....(((((((((((..(((((((((((((..........-----......))))))))))))))))))).))))).................... ( -23.69, z-score =  -4.57, R)
>droSim1.chr2L 13506676 91 - 22036055
CUUCCUUAAGUAGUAUCCAUUAAAGGGUUGUUCUCAACAU-----GCAAAUCAACCGUUUGAUGUACUACUUUAGGAAUCUACAGUCAAAGUCAAC
.(((((.((((((((..(((((((.(((((..........-----......))))).))))))))))))))).))))).................. ( -27.19, z-score =  -5.24, R)
>droSec1.super_3 14603 91 - 7220098
CUUCCUUAAGUAGUAUCCAUUAAAGGGUUGUUCUCAACAU-----GCAAAUCAACCGUUUGAUGUACUACUUUAGGAAUCUACAGUCAAAGUCAAC
.(((((.((((((((..(((((((.(((((..........-----......))))).))))))))))))))).))))).................. ( -27.19, z-score =  -5.24, R)
>droYak2.chr2L 10160058 90 - 22324452
CUUCCUUAAGUAGUAUCCAUUAAAGGGUUGUGGUCACAAU------AAGAUCAACCUUUUGAUUUACUACUUUAGGAAUCUCCAGUCAAAGUCAAC
.(((((.((((((((...((((((((((..(((((.....------..))))))))))))))).)))))))).))))).................. ( -28.40, z-score =  -4.92, R)
>droEre2.scaffold_4929 14922150 90 + 26641161
CUUCCUUAAGUAGUAUCCAUUAAAGGGUUGUGGUCACAAU------UGAAUCGACCGUUUAAUGUACUACUUUAAGAAUCUCCAGUCAAAGUCAAC
....(((((((((((..(((((((.(((((...(((....------)))..))))).))))))))))))).))))).................... ( -25.00, z-score =  -4.10, R)
>droAna3.scaffold_12943 1815546 90 - 5039921
UUUCCUUAAGUAGUAUCCAUUAAAGGGUCGUUAAUAUAUU------CAAAGUGACCGUUUGAUGUACUACUUUAGGUAGCUCCAUUUAAAGUCGGC
...(((.((((((((..(((((((.(((((..........------.....))))).))))))))))))))).))).................... ( -24.16, z-score =  -3.48, R)
>droPer1.super_5 3483604 89 - 6813705
CUUCCUUAAGUAGUAUCCAUUAAGAGGUCGUCAUCUAGCU------AAAAUCGACCUUUUGAUGUACUACUUU-AAAAAGCACAGUCGAAGUCAAC
(((....((((((((..(((((((((((((..........------.....))))))))))))))))))))).-...)))................ ( -24.46, z-score =  -4.39, R)
>dp4.chr4_group1 3555999 90 + 5278887
CUUCCUUAAGUAGUAUCCAUUAAGAGGUCGUCAUCUAGCU------AAAAUCGACCUUUUGAUGUACUACUUUAAAAAAGCACAGUCAAAGUCAAC
.......((((((((..(((((((((((((..........------.....)))))))))))))))))))))........................ ( -23.86, z-score =  -4.91, R)
>droWil1.scaffold_180772 8360837 96 + 8906247
AUUCUUUAAGUAGUAACCUUUAAAGGGUCGUUUGUCCAAUUCUUUUAAAGUCGAUCCUUUAAGUUACUACUUGCAGAAUGUGUUUCUGAAAUCAAC
(((((.(((((((((((..((((((((((((((..............))).)))))))))))))))))))))).)))))................. ( -29.74, z-score =  -5.96, R)
>consensus
CUUCCUUAAGUAGUAUCCAUUAAAGGGUUGUUAUCAAAAU______AAAAUCGACCGUUUGAUGUACUACUUUAAGAAUCUACAGUCAAAGUCAAC
.(((...((((((((..(((((((.(((((.....................))))).)))))))))))))))...))).................. (-19.25 = -18.58 +  -0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:46 2011