| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,739,286 – 13,739,384 |
| Length | 98 |
| Max. P | 0.866367 |
| Location | 13,739,286 – 13,739,384 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Shannon entropy | 0.37868 |
| G+C content | 0.34521 |
| Mean single sequence MFE | -14.49 |
| Consensus MFE | -9.74 |
| Energy contribution | -9.74 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13739286 98 - 23011544 CAUGCCGCCAAAAAUGGCUAAAAAAAAAUACGUUAAGAAAAUAAAAAAAAAAGGAAAAACUAAGGAUCUACCUGACGCCAUUCGAAUGGCAGUUAAGG ....((((((....)))).................................((......))..)).....(((((((((((....))))).))).))) ( -16.30, z-score = -1.50, R) >droSim1.chr2L 13498323 81 - 22036055 CAUGCU-AAAAAAAACCUU-----AAGAAAA----------UAAAAAAAA-GGAAAAAACUAAAAAUCUACCUGACGCCAUUCGAAUGGCAGUUAAGG ......-........((((-----((.....----------........(-((.................)))...(((((....)))))..)))))) ( -11.43, z-score = -2.14, R) >droSec1.super_3 6302 82 - 7220098 CAUGCUAAAAAAAAACCUU-----AAGAAAA----------UAAAAAAAAGGGGAAAAACUAAAAAUCUACCUGACGCCAUUCG-AUGGCAGUUAAGG ...............((((-----((.....----------........((((((...........))).)))...(((((...-)))))..)))))) ( -12.40, z-score = -1.62, R) >droYak2.chr2L 10150861 85 - 22324452 CAUGCCGCCAAAAAUAGGU-----AAAAUACGU--------UAAAAUAAAAACGAAAAGCUAGGAAUGUACCUGACGCCAUUCGAAUGGCAGUUAAGG (((.(((((.......)))-----......(((--------(........))))........)).)))..(((((((((((....))))).))).))) ( -17.00, z-score = -1.48, R) >droEre2.scaffold_4929 14913604 85 + 26641161 CAUGCCGCCAAAAAUAGGU-----AAAAUACUU--------AAAAAAAAAAAACGAAAAAUAGGAAUGUACCUGACGCCAUUCGAAUGGCAGUUAAGG ..((((..........)))-----).....(((--------((.................((((......))))..(((((....)))))..))))). ( -15.30, z-score = -1.92, R) >consensus CAUGCCGCCAAAAAUAGGU_____AAAAUAC_U________UAAAAAAAAAAGGAAAAACUAAGAAUCUACCUGACGCCAUUCGAAUGGCAGUUAAGG ......................................................................(((((((((((....))))).))).))) ( -9.74 = -9.74 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:44 2011