| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,735,228 – 13,735,279 |
| Length | 51 |
| Max. P | 0.830563 |
| Location | 13,735,228 – 13,735,279 |
|---|---|
| Length | 51 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 83.10 |
| Shannon entropy | 0.31843 |
| G+C content | 0.31853 |
| Mean single sequence MFE | -8.93 |
| Consensus MFE | -6.80 |
| Energy contribution | -7.17 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.830563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13735228 51 - 23011544 ----UACGUAUAUAUUUAUCUUUAGAUAUACAUCUUUUUGGGCAACUUGCCAGCA ----...((.((((((((....))))))))..........(((.....))).)). ( -8.80, z-score = -1.94, R) >droSim1.chr2L 13494331 53 - 22036055 --UACGUAUAUAUAUUUAUCUUUAGAUAUACAUCUUUUUGGGCAACUUGCCAGCA --...((...((((((((....))))))))..........(((.....))).)). ( -8.80, z-score = -1.82, R) >droSec1.super_3 2330 53 - 7220098 --CACGUAUAUAUAUUUAUCUUUAGAUAUACAUCUUUUUGGGCAACUUGCCAGCA --...((...((((((((....))))))))..........(((.....))).)). ( -8.80, z-score = -1.92, R) >droYak2.chr2L 10146565 51 - 22324452 ----CACGUAUAUAUUUAUCUUUAGAUAUACAUCUUUUUGGGCAACUUGCCAGCA ----...((.((((((((....))))))))..........(((.....))).)). ( -8.80, z-score = -2.01, R) >droEre2.scaffold_4929 14909608 50 + 26641161 ----CACGUAUAUAUUUAUCUUUAGAUAUACAUC-UUUUGGGCAACUUGCCAGCA ----...((.((((((((....))))))))....-.....(((.....))).)). ( -8.80, z-score = -1.95, R) >dp4.chr4_group1 3542953 50 + 5278887 UAAGAAUGUAUAUAUUUAUCUUUGUAUAU-----CUUUUGGGCAAGUUGCCAGCA ..((((.(((((((........)))))))-----.)))).(((.....))).... ( -9.20, z-score = -0.91, R) >droPer1.super_5 3470513 50 - 6813705 UGAGAAUGUAUAUAUUUAUCUUUGUAUAU-----CUUUUGGGCAACUUGCCAGCA ..((((.(((((((........)))))))-----.)))).(((.....))).... ( -9.30, z-score = -0.87, R) >consensus ____CAUGUAUAUAUUUAUCUUUAGAUAUACAUCUUUUUGGGCAACUUGCCAGCA ..........((((((((....))))))))..........(((.....))).... ( -6.80 = -7.17 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:44 2011