| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,703,470 – 13,703,594 |
| Length | 124 |
| Max. P | 0.907544 |
| Location | 13,703,470 – 13,703,594 |
|---|---|
| Length | 124 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 92.10 |
| Shannon entropy | 0.13959 |
| G+C content | 0.46689 |
| Mean single sequence MFE | -40.38 |
| Consensus MFE | -32.78 |
| Energy contribution | -32.66 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13703470 124 + 23011544 GCCCAGUGCCAGAAGCACGGAUUCAACAGAAGCGGAGGUGUUGGCCAGUUGUGGAUGGCCAAUGCUUUCACUGCUUCAAACUGAAACACACAAAUUGAAAUAGAAAACUUUUCCGAUGGAACAA ..(((((((.....))))(((((((...(((((((((((((((((((........))))))))))))...)))))))....))))...((.....))..............)))..)))..... ( -37.60, z-score = -1.86, R) >droSim1.chr2L 13462150 124 + 22036055 GCCCGGUGCCGGGAGCACGGAUUCUACAAAAGUGGAGGUGUUGGCCAUUUGUGGAUGGCCAAUGCUUUCACUGCUUCAAACUGAAACACACAAAUUGAAAUAGAAAACUUUUCCGAUGGAACAA .((((....))))..(((((((((((....(((((((((((((((((((....)))))))))))))))))))..(((((..((.......))..))))).)))))......)))).))...... ( -44.60, z-score = -3.73, R) >droSec1.super_16 1829907 124 + 1878335 GCCCGGUGCCGGGAGCACGGAUUCAACAAAAGUGGAGGUGUUGGCCAUUUGUGGAUGGCCAAUGCUUUCACUGCUUCAAACUGAAACACACAAAUUGAAAUAGAAAACUUUUCCGAUGGAACAA .((((....))))..((((((.........(((((((((((((((((((....)))))))))))))))))))..(((((..((.......))..)))))............)))).))...... ( -43.30, z-score = -3.23, R) >droYak2.chr2L 10114187 124 + 22324452 GCCAGGUGCCAGGAGCAGGGAUUCCACGAGAGUGGAGGUGUUGGCCAGUCGUGGAUGGUCAAUGCUUUCACUGCUUCAAACUGAAACACACAAAUUGAAAUAGAAAACUUUCCCGAUGGAACAA .....((.(((((((((((((.(((((....)))))(((((((((((........)))))))))))))).)))))))...................((((........))))....))).)).. ( -38.90, z-score = -1.22, R) >droEre2.scaffold_4929 14876855 123 - 26641161 -CCAGGUGGCAGGAGCAGGGAUUCGACGAAAGUGGAGGUGUUGGCCAGCAUUGGAUGGUCGAUGCUUUCACUGCUUCAAACUGAAACACACAAAUUGAAAUAGAAAACUUUCCCGAUGGAACAA -(((..(((..(((((((.......((....))((((((((((((((........)))))))))))))).)))))))...................((((........))))))).)))..... ( -37.50, z-score = -1.69, R) >consensus GCCCGGUGCCAGGAGCACGGAUUCAACAAAAGUGGAGGUGUUGGCCAGUUGUGGAUGGCCAAUGCUUUCACUGCUUCAAACUGAAACACACAAAUUGAAAUAGAAAACUUUUCCGAUGGAACAA .((((((....(((((..(.......)...(((((((((((((((((........))))))))))))))))))))))..))))..........((((....((....))....))))))..... (-32.78 = -32.66 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:33 2011