| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,674,493 – 13,674,594 |
| Length | 101 |
| Max. P | 0.896626 |
| Location | 13,674,493 – 13,674,594 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Shannon entropy | 0.33184 |
| G+C content | 0.50420 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -19.33 |
| Energy contribution | -20.09 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13674493 101 - 23011544 ACACUCACUUACCCACUCAGACUCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUAAAUAAAUGGCU .......................((((((.....((((((.((((.(((((....)))))...))))))))))....))))))((((.........)))). ( -28.00, z-score = -2.22, R) >droSim1.chr2L_random 527432 83 - 909653 ------------------ACACUCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCUGCCUGUCCGCAUUGGCCACUAAAUAAAUGGCU ------------------.....((((((..(((((((....)))))))..........(((.(((...))))))..))))))((((.........)))). ( -24.60, z-score = -1.46, R) >droSec1.super_16 1800938 83 - 1878335 ------------------ACACUCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUAAAUAAAUGGCU ------------------.....((((((.....((((((.((((.(((((....)))))...))))))))))....))))))((((.........)))). ( -28.00, z-score = -2.52, R) >dp4.chr4_group1 3461895 79 + 5278887 --------------------GGUCGGUGCUGUC--GCCUCGGGCCCUUUAGAAUUUUUAACAUGGCUCGGCCUGUCUGCAUUGGCCACUAAAUAAAUGGCU --------------------(((((((((.(.(--(..(((((((..(((((...)))))...)))))))..)).).)))))))))............... ( -26.40, z-score = -1.57, R) >droPer1.super_5 3389303 79 - 6813705 --------------------GGUCGGUGCUGUC--GCCUCGGGCCCUUUAGAAUUUUUAACAUGGCUCGGCCUGUCUGCAUUGGCCACUAAAUAAAUGGCU --------------------(((((((((.(.(--(..(((((((..(((((...)))))...)))))))..)).).)))))))))............... ( -26.40, z-score = -1.57, R) >consensus __________________A_ACUCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUAAAUAAAUGGCU .......................((((((.....((((((.((((..................))))))))))....))))))((((.........)))). (-19.33 = -20.09 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:29 2011