| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,265,251 – 1,265,356 |
| Length | 105 |
| Max. P | 0.554280 |
| Location | 1,265,251 – 1,265,356 |
|---|---|
| Length | 105 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 69.06 |
| Shannon entropy | 0.64250 |
| G+C content | 0.52340 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -9.20 |
| Energy contribution | -9.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1265251 105 + 23011544 ----AGCCAACUGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAUGC-UCCACCUCCU--GCAUUCCCCUUCGCCCUCCUCCUAUCAC-------GACGCAACGCAU ----........(((((((((.(..((((((....)))).))..).))))).((.((((-..........--))))))......))))............-------............ ( -20.40, z-score = -0.72, R) >droSim1.chr2L 1237237 114 + 22036055 ----AGCCAACUGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAUGC-UCCACCUCCUCUGCUUCCCCCUUACCGCUACUCCCACCACCCACCUCGACGCAAUGCAU ----.(((.....)))((((..(((.(((((....))))).........(((((.....-.........)))))...................................))).)))).. ( -19.84, z-score = -0.94, R) >droSec1.super_14 1215863 114 + 2068291 ----AGCCAACUGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAUGC-UCCACCUCCUCUGCUUCCCCCUUCCCGCUAGUUCCACCGCCCACCUCGACGCAACGCAU ----.((....((((((...((((..(((((....))))).........(((((.....-.........)))))................))))...)))))).......))....... ( -23.64, z-score = -1.14, R) >droYak2.chr2L 1240425 91 + 22324452 ----AGCCAACUGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAUGCCUCCAACUCCUCCCCUCCCAUCUCCACGCAACGCAU------------------------ ----..((....))((((....(((.(((((....))))).........(((....)))..........................))).))))..------------------------ ( -14.60, z-score = -0.08, R) >droAna3.scaffold_12916 4727141 106 + 16180835 CAGAAGCCAACUGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAGGC--CGAGUCCCUC-ACUUCCCUCUCACCA------UGCUCGC----UCCUGCGAAACGCAU .....(((.....)))(((.(((((((((((....)))))......((((..((.(((.--.((((.....-)))).))).))..))------)).))))----)).)))......... ( -27.80, z-score = -1.35, R) >dp4.chr4_group3 9735534 109 + 11692001 ----GGGCAACAGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAGGC--CUACACCCUC-CCUCCCUCCUGCCCACCCACCUGCUCUCA---UCCUCCGAAACGCAU ----(((((..((((.(((((.(..((((((....)))).))..).)))))((..(((.--......))).-.))))))..))))).......(((..((.---......))...))). ( -26.10, z-score = -1.49, R) >droPer1.super_8 934405 109 + 3966273 ----GGGCAACAGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAGGC--CUACACCCUC-CCUUCCUCCUGCCCACCCACCUGCUCUCA---UCCUCUGAAACGCAU ----(((((..((((.(((((.(..((((((....)))).))..).)))))((..(((.--......))).-.))))))..))))).......(((..(((---.....)))...))). ( -25.20, z-score = -1.19, R) >droWil1.scaffold_180708 2884989 100 + 12563649 ----AGCCAACUGGUCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAAGG---------------UUUGGUUUGCCAAGCAAGAAAGCAAGUGAGUGUGAGUGAACUCAU ----.((...((.((((((((.(..((((((....)))).))..).))))).))).))(---------------(((((....))))))......))..((((((........)))))) ( -28.40, z-score = -2.29, R) >consensus ____AGCCAACUGGGCGUAUGAGCGAUAUCGAUAACGAUAAUUACACAUGCAGACAUGC__CCACCUCCUC_CCUUCCCCCUGCCCACCAAUCCGAUCAC____UCCGACGAAACGCAU ................(((((.(..((((((....)))).))..).))))).................................................................... ( -9.20 = -9.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:07 2011