| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,622,266 – 13,622,332 |
| Length | 66 |
| Max. P | 0.777066 |
| Location | 13,622,266 – 13,622,332 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 61.27 |
| Shannon entropy | 0.75668 |
| G+C content | 0.53216 |
| Mean single sequence MFE | -17.21 |
| Consensus MFE | -6.98 |
| Energy contribution | -9.37 |
| Covariance contribution | 2.39 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13622266 66 + 23011544 GCCGACUUACUUGGCCGAAUCUCUCUCCCUCCCC-CCUUUUGGCCAAAUGGGCCAGGAAAUUCCUUU----- .((..((((.(((((((((...............-...))))))))).))))...))..........----- ( -15.87, z-score = -0.79, R) >droAna3.scaffold_12943 1681880 71 + 5039921 CAGUACUUACUUGGCAAGUCAGUCAGGCAACUCC-UCUUUUGGCCAAAUGGGGCAGGAAACUCAGCUCCUGG ..........((((((((..((..((....)).)-)..))).)))))..(((((((....))..)))))... ( -19.10, z-score = -0.15, R) >droEre2.scaffold_4929 14805232 58 - 26641161 GCCGUCUGACUUGGCCGAAUCUC--------CCC-ACUUUUGGCCAAAUGGGCCAGGAAACUCCUUU----- ...((((...(((((((((....--------...-...)))))))))..)))).((....)).....----- ( -16.50, z-score = -1.03, R) >droYak2.chr2L 10041555 61 + 22324452 GCCGACUUACUUGGCCGAAUCUGCCU-----CUU-CCUUUUGGCCAAAUGGGGCAGGAAACUCCUUU----- ..........(((((((((.......-----...-...)))))))))..((((.((....)))))).----- ( -17.52, z-score = -1.15, R) >droSec1.super_16 1758250 66 + 1878335 GCCGACUUACUUGGCCGAAUCACCGUCCCUCCCC-CCUUUUGGCCAAGUGGGGCAGGAAACUCCUUU----- .((..((((((((((((((...............-...))))))))))))))...))..........----- ( -22.97, z-score = -1.99, R) >droSim1.chr2L 13391423 65 + 22036055 CCCGACUUACUUUGCCGAAUCUCCGUCUCU-UCC-CCUUUUGGCCAAGUGGGGCAGGAAACUCCUUU----- .((..(((((((.((((((...........-...-...)))))).)))))))...))..........----- ( -16.63, z-score = -0.68, R) >droGri2.scaffold_15126 152711 53 - 8399593 --------------UCAAAUGUACUUGUGCCUUGGAGUUCCUGCACAGGAGUCCACUUAGUAUCCUU----- --------------.........(((((((...((....)).)))))))..................----- ( -11.90, z-score = -0.74, R) >consensus GCCGACUUACUUGGCCGAAUCUCCCUCCCUCCCC_CCUUUUGGCCAAAUGGGGCAGGAAACUCCUUU_____ .((..((((.(((((((((...................))))))))).))))...))............... ( -6.98 = -9.37 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:24 2011