| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,615,795 – 13,615,896 |
| Length | 101 |
| Max. P | 0.966591 |
| Location | 13,615,795 – 13,615,896 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.32 |
| Shannon entropy | 0.31728 |
| G+C content | 0.48601 |
| Mean single sequence MFE | -31.37 |
| Consensus MFE | -24.37 |
| Energy contribution | -24.03 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13615795 101 + 23011544 GCUGCGGUUGGAUGAAUCCAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUACCGUUGGUCAUUCAACUCGCGGUCACCGACAAAGUCGCCC-- (((((((.((((....))))..))))).))..((((((...(((((((((.....)))))(((((.(((......))).)))))....))))..)))))).-- ( -35.90, z-score = -2.86, R) >droSim1.chr2L 13385004 101 + 22036055 GCUGCGGUUGGAUGAAUCCAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUACCGUUGGUCAUUCAACCCGCGGUCACCGACAGAGUCGCCU-- (((((((.((((....))))..))))).))..((((((.(.(((((((((.....)))))(((((.(((......))).)))))....)))).))))))).-- ( -38.70, z-score = -3.26, R) >droSec1.super_16 1751826 101 + 1878335 GCUGCGGUUGGAUGAAUCCAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUACCGUUGGUCAUUCAACCCGCGGUCACCGACAGAGUCGCCU-- (((((((.((((....))))..))))).))..((((((.(.(((((((((.....)))))(((((.(((......))).)))))....)))).))))))).-- ( -38.70, z-score = -3.26, R) >droYak2.chr2L 10035187 101 + 22324452 GCUGCGGUUGGAUGAAUCCAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUACCGUUGGUCAUUCAACCCGCGGUCACCGACAAAGUCUCCC-- (((((((.((((....))))..))))).))..((.(((...(((((((((.....)))))(((((.(((......))).)))))....))))..))).)).-- ( -31.90, z-score = -1.95, R) >droEre2.scaffold_4929 14798870 101 - 26641161 GCGGCGGUUGGAUGAAUCCAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUACCGUUGGUCAUUCAACCCGCGGUCACCGACAGAGUCUCCC-- (((((((.((((....))))..)))).)))..((.(((.(.(((((((((.....)))))(((((.(((......))).)))))....)))).)))).)).-- ( -31.80, z-score = -1.14, R) >droAna3.scaffold_12943 1675532 103 + 5039921 GCUGCGGUUGGAUGAAUCCAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUAACGUUGGUCAUUCAACCCGUGGUCACAGACUGUCUGUUUCCC ((..(((((((((((..(((........(((((....)))))((.(((((.....))))).))..))))))))))).)))..)).((((.....))))..... ( -31.40, z-score = -1.74, R) >dp4.chr4_group1 3407170 91 - 5278887 GCUGCGGUUGGAUGAAUACAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUAACGCUGGUCAUUCAACCCGUGGUCACAGAC------------ ((..(((((((((((...((....((..(((((....)))))((.(((((.....))))).)))))).)))))))).)))..)).......------------ ( -28.40, z-score = -1.63, R) >droPer1.super_5 3331862 91 + 6813705 GCUGCGGUUGGAUGAAUACAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUAACGCUGGUCAUUCAACCCGUGGUCACAGAC------------ ((..(((((((((((...((....((..(((((....)))))((.(((((.....))))).)))))).)))))))).)))..)).......------------ ( -28.40, z-score = -1.63, R) >droWil1.scaffold_180772 8059372 96 - 8906247 GUUGCGGUUGGAUGAAUACAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUAACGUUGGUCAUUCAACUCGCGGACAGAGACUGCCG------- ...((((((((((((..((.........(((((....)))))((.(((((.....))))).))))...))))))))).)))((.(((...))))).------- ( -30.50, z-score = -1.86, R) >droVir3.scaffold_12723 5230570 81 + 5802038 -CUGCGGUUGGAUGAAUACAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUAACGCUGGUCAUUCAACCCGCG--------------------- -..((((((((((((...((....((..(((((....)))))((.(((((.....))))).)))))).)))))))).)))).--------------------- ( -27.00, z-score = -2.69, R) >droMoj3.scaffold_6500 15900889 99 - 32352404 -CUGCGGUUGGAUGAAUACAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUAACGCUGGUCAUUCAACUCGCA-CCAGUAGCAAACUCACUC-- -.(((((((((((((...((....((..(((((....)))))((.(((((.....))))).)))))).))))))))).))))-..................-- ( -27.50, z-score = -1.62, R) >droGri2.scaffold_15126 143955 88 - 8399593 GCUGUGGUUGGAUGAAUACAUUUUGCAUGCGUGGCGACAUGUGUCGACUUCUAUUAAGUUAACACUGGUCAUUCAACUCGCAUUCGCC--------------- (((((((((((((((...((..........(((....)))((((..((((.....))))..)))))).))))))))).))))...)).--------------- ( -26.20, z-score = -1.80, R) >consensus GCUGCGGUUGGAUGAAUACAUUUUGCAUGCGUGGCGACAUGUGUCAACUUCUAUUAAGUUAACGUUGGUCAUUCAACCCGCGGUCACCGACAGAGUC_C____ ...((((((((((((...((....(.(((((((....))))))))(((((.....))))).....)).))))))))).)))...................... (-24.37 = -24.03 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:23 2011