| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,593,591 – 13,593,704 |
| Length | 113 |
| Max. P | 0.581679 |
| Location | 13,593,591 – 13,593,704 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 54.77 |
| Shannon entropy | 0.82061 |
| G+C content | 0.30513 |
| Mean single sequence MFE | -18.16 |
| Consensus MFE | -5.52 |
| Energy contribution | -5.58 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13593591 113 + 23011544 CUAUUGGUAUUUAUUUUCUUUGGCC-CUAUACGUGCAUAUUAACAUAUGUACCUAUCUUUGCUUAUAUA------CUAUGUACUUUUCUUCUAGCAAAUUCGUACAUUUGCGAAAAAUAU .....(((((...........(((.-..(((.((((((((....)))))))).)))....)))......------....))))).........((((((......))))))......... ( -17.20, z-score = -1.34, R) >droSim1.chr2L 13361919 111 + 22036055 CUAUUGGUAUUUAUUUUCUUUGGCC-CUAUACGUGCAUAUUAAUAUAUGUACCUAUCUUUGCUUAUAUA------CCAUGUACUUUUCUUCUAGCAGAUUCUUACAUUUGCGAAAUAU-- ....((((((...........(((.-..(((.((((((((....)))))))).)))....)))...)))------)))...............((((((......)))))).......-- ( -19.44, z-score = -2.16, R) >droYak2.chr2L 10013128 108 + 22324452 CCAUUGGUAUUUAUUUUCUUUGGCU-UUAUACGUGCAUAUUAAUAUAUGUACCUAUCUUUGCAUAUAUAUGUAUAGCAUGUACUUUUGUACUAGCAGAUUCGUAAAAGA----------- ................(((((.((.-...(((((((((((..(((((((((........)))))))))..)))).)))))))..(((((....)))))...)).)))))----------- ( -22.80, z-score = -1.42, R) >droEre2.scaffold_4929 14777098 109 - 26641161 CUAUUGGUAUUUAUUUUCUUUGGCC-CUAUACGUGCAUAUUAAUAUAUGUACCUAUCUUUGCAUAUAUA------GCUUGUACUUUUGUUCUAGCAGAUUGGUACAUUUGCAAAAA---- ......................((.-..(((.((((((((....)))))))).)))....)).......------((.(((((((((((....)))))..))))))...)).....---- ( -20.40, z-score = -0.64, R) >droAna3.scaffold_12943 1649545 86 + 5039921 ----------------CUAUUGGUAUUUACUUCUUUGCAAUCCAACAUGAA--UGCCUUUACAUACCUAACUCCGAUGUACAUACUCCGAUUUGCGGAAAAAGA---------------- ----------------.....((((((((.....(((.....)))..))))--))))..(((((...........))))).....((((.....))))......---------------- ( -10.40, z-score = -0.14, R) >droWil1.scaffold_180772 8027076 93 - 8906247 ------CCAUAAUAUUUCUCUAGCAGCCUUUUGUGUAUAUUUGUAGGUACAUUCAUAUAUACUUAUGUAU-----AUACAUAUAAAUGUUCUUA-GCGCUGAUAU--------------- ------.....(((((.(.((((.(((.((((((((((((.((((((((.((....)).)))))))).))-----))))))).))).))).)))-).)..)))))--------------- ( -18.70, z-score = -1.38, R) >consensus CUAUUGGUAUUUAUUUUCUUUGGCC_CUAUACGUGCAUAUUAAUAUAUGUACCUAUCUUUGCAUAUAUA______ACAUGUACUUUUCUUCUAGCAGAUUCGUACAUUU___________ ......................((....(((.((((((((....)))))))).)))....)).......................................................... ( -5.52 = -5.58 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:23 2011