| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,581,771 – 13,581,869 |
| Length | 98 |
| Max. P | 0.865269 |
| Location | 13,581,771 – 13,581,869 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 87.25 |
| Shannon entropy | 0.19713 |
| G+C content | 0.28260 |
| Mean single sequence MFE | -12.90 |
| Consensus MFE | -12.66 |
| Energy contribution | -11.85 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13581771 98 + 23011544 ---------UCAGGUUCUUCAUUACCAGCAAUUAAAUCAUACGAGCCAGUUCGUUUCACUUGCAAGUUAUUUUAAAAUUGUAUAAUCCUAGUAAAGGUUUAAAAUUA ---------...(((........))).....(((((((..(((((....)))))......(((((............))))).............)))))))..... ( -11.90, z-score = -0.65, R) >droSim1.chr2L 13349651 97 + 22036055 ---------UCAGGUUCUUCAUUACCAGCAAUUAAAUCAUACGAGCCAGUUCGUUUCACUUGCAAGUUAUUUUUAAAUUGUAUAAUC-UACUAAAGGUUUAAAAUUA ---------...(((........))).....(((((((..(((((....)))))......(((((.(((....))).))))).....-.......)))))))..... ( -13.50, z-score = -1.46, R) >droSec1.super_16 1718778 97 + 1878335 ---------UCAGGUUCUUCAUUACCAGCAAUUAAAUCAUACGAGCCAGUUCGUUUCACUUGCAAGUUAUUUUUAAAUUGUAUAAUC-UACUAAAGGUUUAAAAUUA ---------...(((........))).....(((((((..(((((....)))))......(((((.(((....))).))))).....-.......)))))))..... ( -13.50, z-score = -1.46, R) >droYak2.chr2L 10001358 105 + 22324452 AUUUAUAAAUAAGGUUCUUCAUUAUCACCAAUUAAAGCAUACAAGC-AGCUCGUUUCACUUGUAAGUUAUUUUUAAAUUAUAUAACC-UACUUCAGCUUUGAAAUUA ............(((...........)))..(((((((.((((((.-...........)))))).(((((...........))))).-.......)))))))..... ( -12.70, z-score = -0.96, R) >consensus _________UCAGGUUCUUCAUUACCAGCAAUUAAAUCAUACGAGCCAGUUCGUUUCACUUGCAAGUUAUUUUUAAAUUGUAUAAUC_UACUAAAGGUUUAAAAUUA ............(((........))).....(((((((..(((((....)))))......(((((.(((....))).))))).............)))))))..... (-12.66 = -11.85 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:21 2011