| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,576,388 – 13,576,484 |
| Length | 96 |
| Max. P | 0.794561 |
| Location | 13,576,388 – 13,576,484 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 65.68 |
| Shannon entropy | 0.56969 |
| G+C content | 0.48855 |
| Mean single sequence MFE | -34.32 |
| Consensus MFE | -12.53 |
| Energy contribution | -14.21 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13576388 96 - 23011544 UUUAUAAAUACGCCAUGAGCUGAGAGACCAGCGAUUGAAUGAAGUGC----AAUCCCAUGGGGUCUCCAGUGGCUGAGCUACAGUUGCUUUGCAAUUUUA-------------------- .........((.(((((.((((......))))(((((.........)----)))).))))).))....((..((((.....))))..))...........-------------------- ( -25.30, z-score = -0.59, R) >droSim1.chr2L_random 522448 96 - 909653 UUCAUAAGUACGACAUGAGCUGGGAACCCAGCGAUUGAAUGAAGUGG----AGCCCCAGGGGGACCUCAGUUGCUGAGCUACAGUUGGUGUCAAAUUUUA-------------------- ...........(((((.(((((....(.((((((((((......(((----....)))((....)))))))))))).)...))))).)))))........-------------------- ( -34.80, z-score = -2.80, R) >droSec1.super_16 1713552 94 - 1878335 UUCAUAAAUACGACAUGAGCUGGGAGCCAAGCGAUUGAA--AUGUGG----AGGCCCAGGGGGACCUCAGUUGCUGAGCUACAGCUAGUGUCCAAUAUUA-------------------- ...........(((((.(((((..(((..(((((((((.--...(((----....)))((....)))))))))))..))).))))).)))))........-------------------- ( -37.40, z-score = -3.79, R) >droYak2.chr2L 9996044 107 - 22324452 --CAUAAAUACGCCAUGAGCUGAGAGGCCAGCGAUUGAAUCAAGUG-----AGAUCCCAAGGGUCCCCAGUGGCUGAGCUACUG-UGGAAUU-----CUGGCUACUGGUUUCCAAUUUAA --.............((((.((.((((((((.(((...))).(((.-----(((.((....))(((.(((((((...)))))))-.)))..)-----)).))).)))))))))).)))). ( -32.40, z-score = -0.97, R) >droEre2.scaffold_4929 14760412 117 + 26641161 --CAUAAAUACGACAUGAGCUGAGAGGCCAGCGAUUGAAUCAAGUGGGUUCGGGUUCCCAGGGGUCCCAGUGGCUGAGCUUCAG-UGGCGUUUGGUGUGGGCCACUGGAUUCGAAUUUAA --..(((((.(((..........(((((((((.((((((((.....)))))(((..((....)).)))))).)))).)))))((-((((.(.......).))))))....))).))))). ( -41.70, z-score = -1.42, R) >consensus UUCAUAAAUACGACAUGAGCUGAGAGCCCAGCGAUUGAAUCAAGUGG____AGGCCCAGGGGGACCCCAGUGGCUGAGCUACAG_UGGUGUCCAAUUUUA____________________ ...........(((((.(((((((....((((.((((..............((..((....))..)))))).))))..)).))))).)))))............................ (-12.53 = -14.21 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:20 2011