| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,554,202 – 13,554,260 |
| Length | 58 |
| Max. P | 0.509006 |
| Location | 13,554,202 – 13,554,260 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 68.08 |
| Shannon entropy | 0.50878 |
| G+C content | 0.35489 |
| Mean single sequence MFE | -8.51 |
| Consensus MFE | -4.25 |
| Energy contribution | -3.88 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13554202 58 + 23011544 UAACCGAC--UUAAAGGUUUUUGCGUGCGCAUUUUAAUAUGCCAAUUAUAAACAUAAUCC ........--......((((.....((.((((......)))))).....))))....... ( -7.20, z-score = -0.27, R) >droYak2.chr2L 9978542 58 + 22324452 UAACCGAC--UUAAAGGUUAUGGCGUGCGCAUUUCAAUAUGCCAUUCAUUAACAUAAUCC (((((...--.....)))))(((((((..........)))))))................ ( -11.00, z-score = -1.45, R) >droEre2.scaffold_4929 14743704 58 - 26641161 UAACCGAC--UUAAAGGUUAUGGCGUGCGCAUUUCAAUAUGCCAUUCAUUAACAUAAUCC (((((...--.....)))))(((((((..........)))))))................ ( -11.00, z-score = -1.45, R) >droMoj3.scaffold_6500 16346346 60 + 32352404 CGACUCACAAUUGCAAUAUUCUGUGAUCCCCCUCUAAAAAGCAAAAAUAGAAUAAAAAAC ................((((((((......................))))))))...... ( -4.85, z-score = -1.74, R) >consensus UAACCGAC__UUAAAGGUUAUGGCGUGCGCAUUUCAAUAUGCCAAUCAUUAACAUAAUCC .((((..........))))((((((((..........))))))))............... ( -4.25 = -3.88 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:16 2011