| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,553,193 – 13,553,291 |
| Length | 98 |
| Max. P | 0.804199 |
| Location | 13,553,193 – 13,553,291 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 71.47 |
| Shannon entropy | 0.54491 |
| G+C content | 0.36022 |
| Mean single sequence MFE | -22.59 |
| Consensus MFE | -7.68 |
| Energy contribution | -8.21 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13553193 98 + 23011544 AAAAGCAACAGUUCUGAGAUACAGUAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUAUCCGUAUCUUAGUUUCAGCUUGA-GAUUGCGGCUAC ...(((..(((((..(((...((((...........))))((((((((((((..((((...))))..))))))))))))..)))..-)))))..))).. ( -28.20, z-score = -3.23, R) >droSim1.chr2L 13326421 92 + 22036055 AAAAGCAACAGUUUUGAGAUACAGUAACAAGAUACAGCUGGGAAUUAAGAUAAAUAUACUG------UAUCUCAGUUUCAACUUGA-GAUUGCGGAUAC ....((((.....(((((((((((((...........((........)).......)))))------))))))))((((.....))-))))))...... ( -20.17, z-score = -2.37, R) >droSec1.super_16 1693121 86 + 1878335 AAAAGCAACAGUUCUGAGAUACAGUAACAAGAUACAGCUGGGAAUUAAGAUAAAGA------------GUUUCAGUUUCAACUUGA-GAUUGCGGCUAC ...(((..(((((..(((...((((...........))))((((((.((((.....------------)))).))))))..)))..-)))))..))).. ( -18.00, z-score = -1.37, R) >droYak2.chr2L 9977532 98 + 22324452 AAGAGCAACAGUUCUGAGAUAGAGAAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUAUUUGUAUCUCAGUUUCAGCUUGA-GAUUGCGGCUAC ...(((..((((((((((((.((((.(((.(((((((.....................)))))))))).)))).))))))).....-)))))..))).. ( -26.70, z-score = -2.53, R) >droEre2.scaffold_4929 14742735 98 - 26641161 AAGAGCAACAGUUCUUAAAUGCAGAAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUAUUCGUAUCUCAGUUUCAGCUUGA-GAUUGCGGCUAC ...(((..((((.(((((..((.(((((.((((((..((........)).....((........))))))))..))))).))))))-)))))..))).. ( -22.80, z-score = -1.23, R) >droMoj3.scaffold_6500 16345392 97 + 32352404 AAGACAAUGAAAAUUGAGACAAACCUUACACAUUUUAAAAAAGCUUUUAAUACACUAACUAAA--CGUACUUUGGUUCUGUUGAAACGCUUGUGAGGAC ....((((....)))).......(((((((...........(((((((((((....(((((((--.....))))))).)))))))).)))))))))).. ( -19.70, z-score = -2.62, R) >consensus AAAAGCAACAGUUCUGAGAUACAGUAACAAGAUACAGCUGGGAAUUAAGAUAAAGAUACUGUA__CGUAUCUCAGUUUCAGCUUGA_GAUUGCGGCUAC ...(((..(((((..............((((....((((((((..........................))))))))....))))..)))))..))).. ( -7.68 = -8.21 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:15 2011