| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,514,905 – 13,515,048 |
| Length | 143 |
| Max. P | 0.820529 |
| Location | 13,514,905 – 13,515,048 |
|---|---|
| Length | 143 |
| Sequences | 10 |
| Columns | 148 |
| Reading direction | reverse |
| Mean pairwise identity | 73.72 |
| Shannon entropy | 0.56537 |
| G+C content | 0.40617 |
| Mean single sequence MFE | -35.86 |
| Consensus MFE | -15.97 |
| Energy contribution | -16.41 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13514905 143 - 23011544 ACACUGUUUUUAGG-----UUUUUUGGCUUGAUGCCUUCUGGCAUUUAAUUCCCCCGGUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAAGUACAUAAAAAGAGCCAGGCCACCACGAAAGGAAAACA .....((((((.((-----(..((((((((((((((....))))))...(((((..((..((.(((....)))..((((((((...))))))))..))...)).)))))............))))))))..))).(....))))))). ( -41.40, z-score = -2.18, R) >droAna3.scaffold_12943 2219202 139 - 5039921 ACAUUUUUUUU----UUAGGUUUUUGGCUGGCUGCCUUCUGGCAUUUGCCGCCGUCGCUCGAAUGGUGUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAGGCGCAUAAAAAGCCCGA-----CAGAGAAACGAAAACA .(.(((((((.----(..((((((((((.(((((((....))))...))))))............(((((((...((((((((...)))))))).(((......)))..))))))).)))))))..)-----.))))))).)...... ( -43.10, z-score = -2.00, R) >droEre2.scaffold_4929 14706368 140 + 26641161 ACUCUGUUUUUAGG-----UUUUUUGGCUUGAUGCCUUCUGGCAUUUAAUUCCCCCGGUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAAGCACAUAAAAAGAGUCAGG---CCACGAAAGGAAAACA .....((((((...-----((((.((((((((((((....)))......(((((..((..((.(((....)))..((((((((...))))))))..))...)).)))))..............))))))---))).)))).)))))). ( -39.00, z-score = -1.55, R) >droYak2.chr2L 9943719 139 - 22324452 ACACUGUUUUUAGG------UUUUUGGCUUGAUGCCUUCUGGCAUUUAAUUCGCCCGGUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAAGCACAUAAAAAGAGCCAGG---CCACGAAAGGAAAACA .....((((((.((------(..(((((((((((((....)))))).......(((((.....(((....)))..((((((((...))))))))........)))))..............))))))))---)).(....))))))). ( -39.40, z-score = -1.71, R) >droSec1.super_16 1660178 143 - 1878335 ACACUGUUUUUAGG-----UUUUUUGGCUUGAUGCCUUCUGGCAUUUAAUUCCCCCGGUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAGAGCACAUAAAAAGAGCCAGGCCACCACGAAAGAAAAACA .....((((((.((-----(..((((((((((((((....))))))...(((.(((((.....(((....)))..((((((((...))))))))........))))).)))..........))))))))..))).(....))))))). ( -42.00, z-score = -2.49, R) >droSim1.chr2L_random 508743 142 - 909653 ACACUGUUUUUAGG------UUUUUGGCUUGAUGCCUUCUGGCAUUUAAUUCCCCCGGUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAAGCACAUAAAAAGAGCCAGGCCACCACGAAAGGAAAACA .....((((((.((------(.((((((((((((((....))))))...(((((..((..((.(((....)))..((((((((...))))))))..))...)).)))))............))))))))..))).(....))))))). ( -40.20, z-score = -1.74, R) >droPer1.super_5 3192996 130 - 6813705 ACAUUCUGUUUAGGGUUUUUUUUUUGGCUUGCUGCCUUCUGGCAUUU---GCCUUCGCUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAAGCACAUAAAAA----AG-----UAGCAAAGCG------ ..........................(((((((((....(((((...---((((((....))).))).)))))..((((((((...))))))))...(((((....)))))..........----.)-----)))).)))).------ ( -31.70, z-score = -0.54, R) >dp4.chr4_group1 3243723 130 + 5278887 ACAUUCUGUUUAGGGUUUUUUUUUUGGCUUGCUGCCUUCUGGCAUUU---GCCUUCGCUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAAGCACAUAAAAA----AG-----UAGCAAAGCG------ ..........................(((((((((....(((((...---((((((....))).))).)))))..((((((((...))))))))...(((((....)))))..........----.)-----)))).)))).------ ( -31.70, z-score = -0.54, R) >droWil1.scaffold_180708 5178682 116 - 12563649 -----------------ACUUUUUUGGCUUGCUGCCUUC-GUUAU-----GCCUUCGCUCUGAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCC-GCGAAAGCAAAUGUACAUAAAAACAAAACCAAAAAA-------- -----------------...(((((((.(((.......(-(((.(-----((.(((((.....(((....)))..((((((((...)))))))).........-))))).)))))))..........)))..))))))).-------- ( -23.13, z-score = -1.54, R) >droGri2.scaffold_14978 330046 123 - 1124632 ACAGUGUGUUUCAA--UGUGUUUUUGGCUUUUUGCCGUUUG------------------CGGCUGCCUUGCCAAAAUUAUGACAAAAUUAUGAGACCCUUUCU-AAGAAAGAACCUACAGAAAAAACACAAAAGACAAAAGACA---- ....(((((((...--((((.(((((((.....((((....------------------))))......)))))))((((((.....))))))....(((((.-..)))))....))))....)))))))..............---- ( -27.00, z-score = -1.36, R) >consensus ACACUGUUUUUAGG_____UUUUUUGGCUUGAUGCCUUCUGGCAUUUAAUUCCCCCGGUCGAAUGGUUUGCCAACAUUAUGACAAAGUUAUGAUACUCUUUCCUGGGAAAGCACAUAAAAAGAGCCAGG___CCACGAAAGGAAAACA .......................(((((....((((....))))..........(((......)))...))))).((((((((...))))))))...(((((....)))))..................................... (-15.97 = -16.41 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:10 2011