| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,514,702 – 13,514,812 |
| Length | 110 |
| Max. P | 0.849315 |
| Location | 13,514,702 – 13,514,812 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.29 |
| Shannon entropy | 0.39525 |
| G+C content | 0.29913 |
| Mean single sequence MFE | -21.48 |
| Consensus MFE | -14.35 |
| Energy contribution | -13.85 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13514702 110 + 23011544 --------AAAUAUUUGUAUAUAAAGAUAUUGCAGUUUAUGCAAUGUGUGGUAGCUAAAUACAUAUGUAUGUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAAC --------...((((((..(((..(.((((((((.....)))))))).).)))..))))))..(((((((....)))))))..((((.(((((((((.....)))))))))))))... ( -28.60, z-score = -2.97, R) >droYak2.chr2L 9943523 104 + 22324452 AUUUAAACAAACAUUAAAAUAUGAAGGAAUUGUAAUUGAAAUAAUG--------------AUAUAGAUACAUAGAUACAUAGAUCGGUAUUGAUUUUCACGGGGAAUCAAUCCGAAAC ...................((((.......((((............--------------.......))))......))))..((((.(((((((((.....)))))))))))))... ( -14.23, z-score = -0.42, R) >droSec1.super_16 1659976 110 + 1878335 --------AAAUAUUUAAAUAUAAUGAUAUUGUAGUUUAAGCAAUCGGCUGUUGCUACCUCCGCACAUACAUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAAC --------.((((((..........))))))(((((...(((.....)))...))))).........................((((.(((((((((.....)))))))))))))... ( -21.70, z-score = -1.40, R) >droSim1.chr2L_random 508541 110 + 909653 --------AAAUAUUUAAAUAUAAUGAUACUGUAGUUUAAGCAAUGGUCUGUUGCUACCUACGCACAUACAUACAUACAUAGAUCGGUAUUGAUUUUUACUGAGAAUCAAUCCGAAAC --------.......................((((....((((((.....))))))..)))).....................((((.((((((((((...))))))))))))))... ( -21.40, z-score = -1.64, R) >consensus ________AAAUAUUUAAAUAUAAAGAUAUUGUAGUUUAAGCAAUGGGCUGUUGCUACCUACACACAUACAUACAUACAUAGAUCGGUAUUGAUUUUUACUGGGAAUCAAUCCGAAAC ............................(((((.......)))))......................................((((.(((((((((.....)))))))))))))... (-14.35 = -13.85 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:09 2011