| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,499,485 – 13,499,579 |
| Length | 94 |
| Max. P | 0.607310 |
| Location | 13,499,485 – 13,499,579 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.70 |
| Shannon entropy | 0.57759 |
| G+C content | 0.40992 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -9.32 |
| Energy contribution | -9.67 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13499485 94 - 23011544 -UAUUCGUUAGCUAUAGAUUGGAUGAU-ACAUCCAAAAGAUGGGCA-------GGGAAAUCAAGUGGCUU---GCGAAGAAUAGAGGAGUUAAGCCUCGGGAAAUA -..(((((.((((((...(((((((..-.)))))))..(((.....-------.....)))..)))))).---))))).....((((.......))))........ ( -25.20, z-score = -2.52, R) >droWil1.scaffold_180708 7336256 87 + 12563649 -UAUUUGAUUCCUUGUGGAAGAAUA---ACAUUCAUUGGCCAAGGC------AGGUCCAUAUAGUACCUCUUAGCUAAAAGAUUACUGACAGAAUCU--------- -.....(((((..((((((.((((.---..))))....((....))------...))))))(((((..((((......)))).)))))...))))).--------- ( -17.30, z-score = -0.40, R) >droAna3.scaffold_12943 2204128 103 - 5039921 -UGCUAGCUAUCUAUUGGUUGGAUAGUCACACAUAAAACAGAAAUAUAGAAACAGAAAAGGAAGUGACUC--GGCGAAUUAUAGAGUAAGAAAGCCUUGGGAAGUG -.(((.((((((((.....))))))))..............................((((.....((((--...........)))).......))))....))). ( -15.70, z-score = 0.43, R) >droEre2.scaffold_4929 14691148 94 + 26641161 -UAUUCGAUAGCUAUAGAUUGGAUGAU-ACAUCCGAAAGAUGAGCA-------GGGAAAUCAAGUGGCUC---GCGAAGAAUAGAGGAGCUAUGCCUCGGGAAAUA -..((((..((((((...(((((((..-.)))))))..(((.....-------.....)))..)))))).---.)))).....((((.......))))........ ( -22.70, z-score = -0.91, R) >droYak2.chr2L 9927813 95 - 22324452 AUAUUCGAUAGCUAUAGACUGGAUGAU-ACAUCCAAAAGAUGAGCA-------GGGAAAUCAAGUGGCUC---GCGAAGAAUGGAGGAGUUACGCCUCGGGAAAUA ...((((..((((((....((((((..-.))))))...(((.....-------.....)))..)))))).---.)))).....((((.......))))........ ( -21.70, z-score = -0.67, R) >droSec1.super_16 1644802 94 - 1878335 -UAUUCGUUAGCUAUAGAUUGGAUGAU-ACAUCCAAAAGAUGGGCA-------GGGAAAUCAAGUGGCUU---GCGAAGAAUAGAGGAGUUAAGCCUCGGGAAAUA -..(((((.((((((...(((((((..-.)))))))..(((.....-------.....)))..)))))).---))))).....((((.......))))........ ( -25.20, z-score = -2.52, R) >droSim1.chr2L 13281374 94 - 22036055 -UAUUCGUUAGCUAUAGAUUGGAUGAU-ACAUCCAAAAGAUGGGCA-------GGGAAAUCAAGUGGCUU---GCGAAGAAUAGAGGAGUAAAGCCUCGGGAAAUA -..(((((.((((((...(((((((..-.)))))))..(((.....-------.....)))..)))))).---))))).....((((.......))))........ ( -25.20, z-score = -2.70, R) >consensus _UAUUCGAUAGCUAUAGAUUGGAUGAU_ACAUCCAAAAGAUGAGCA_______GGGAAAUCAAGUGGCUC___GCGAAGAAUAGAGGAGUUAAGCCUCGGGAAAUA .(((((....(((.....(((((((....)))))))......)))..................((........))...)))))((((.......))))........ ( -9.32 = -9.67 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:07 2011