| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,257,424 – 1,257,475 |
| Length | 51 |
| Max. P | 0.894426 |
| Location | 1,257,424 – 1,257,475 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 94.77 |
| Shannon entropy | 0.07202 |
| G+C content | 0.43791 |
| Mean single sequence MFE | -13.57 |
| Consensus MFE | -12.14 |
| Energy contribution | -11.70 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1257424 51 + 23011544 ACUGGGAAUCUGCAUUCCGGAGACAGACUUGUCCCAGAAAGAUACAUAAAU .((((((.(((((........).))))....)))))).............. ( -13.30, z-score = -2.13, R) >droSim1.chr2L 1229522 51 + 22036055 UCUGGGAAUCCGCAUUCCGGAGUCAGACUUGUCCCAGAAAGAUACAUAAAU (((((((.((((.....))))..........)))))))............. ( -14.30, z-score = -2.15, R) >droSec1.super_14 1208098 51 + 2068291 UCUGGGAAUCCGCAUUCUGGAGUCAGACUUGUCCCAGAAAGAUACAUAAAU (((((((........((((....))))....)))))))............. ( -13.10, z-score = -1.50, R) >consensus UCUGGGAAUCCGCAUUCCGGAGUCAGACUUGUCCCAGAAAGAUACAUAAAU .((((((.((((.....))))..........)))))).............. (-12.14 = -11.70 + -0.44)
| Location | 1,257,424 – 1,257,475 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 94.77 |
| Shannon entropy | 0.07202 |
| G+C content | 0.43791 |
| Mean single sequence MFE | -14.20 |
| Consensus MFE | -13.79 |
| Energy contribution | -13.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894426 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1257424 51 - 23011544 AUUUAUGUAUCUUUCUGGGACAAGUCUGUCUCCGGAAUGCAGAUUCCCAGU ..............((((((...((((((.........)))))))))))). ( -13.80, z-score = -1.74, R) >droSim1.chr2L 1229522 51 - 22036055 AUUUAUGUAUCUUUCUGGGACAAGUCUGACUCCGGAAUGCGGAUUCCCAGA .............(((((((...(((((.(........))))))))))))) ( -14.40, z-score = -1.34, R) >droSec1.super_14 1208098 51 - 2068291 AUUUAUGUAUCUUUCUGGGACAAGUCUGACUCCAGAAUGCGGAUUCCCAGA .............(((((((...(((((.(........))))))))))))) ( -14.40, z-score = -1.62, R) >consensus AUUUAUGUAUCUUUCUGGGACAAGUCUGACUCCGGAAUGCGGAUUCCCAGA ..............((((((...(((((.(........)))))))))))). (-13.79 = -13.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:05 2011