| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,488,230 – 13,488,340 |
| Length | 110 |
| Max. P | 0.786901 |
| Location | 13,488,230 – 13,488,340 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.32 |
| Shannon entropy | 0.07545 |
| G+C content | 0.37975 |
| Mean single sequence MFE | -26.42 |
| Consensus MFE | -25.26 |
| Energy contribution | -25.34 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13488230 110 - 23011544 --GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC-UUUUGGGAAAACUUGAUACCAUU------- --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))-)))))))).))))))))......------- ( -25.70, z-score = -1.32, R) >droSim1.chr2L 13270129 110 - 22036055 --GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC-UUUUGGGAAAACUUGAUACCAUU------- --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))-)))))))).))))))))......------- ( -25.70, z-score = -1.32, R) >droSec1.super_16 1633503 110 - 1878335 --GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC-UUUUGGGAAAACUUGAUACCAUU------- --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))-)))))))).))))))))......------- ( -25.70, z-score = -1.32, R) >droYak2.chr2L 9916429 110 - 22324452 --GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC-UUUUGGGAAAACUUGAUACCAUU------- --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))-)))))))).))))))))......------- ( -25.70, z-score = -1.32, R) >droEre2.scaffold_4929 14680071 110 + 26641161 --GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC-UUUUGGGAAAACUUGAUACCAUU------- --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))-)))))))).))))))))......------- ( -25.70, z-score = -1.32, R) >droAna3.scaffold_12943 2192618 111 - 5039921 --AACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUUUUUGGGAAAACUUGAUACCAUU------- --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))).))))))).))))))))......------- ( -25.70, z-score = -1.35, R) >dp4.chr4_group1 3213947 117 + 5278887 --GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC-UUUUGGGAAAACUUGAUACCAUUAUUAUUA --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))-)))))))).))))))))............. ( -25.70, z-score = -1.24, R) >droPer1.super_5 3162421 117 - 6813705 --GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC-UUUUGGGAAAACUUGAUACCAUUAUUAUUA --....((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))-)))))))).))))))))............. ( -25.70, z-score = -1.24, R) >droWil1.scaffold_180708 7321821 113 + 12563649 GUGGCUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUUUUUGGGAAAACUUGAUACCAUU------- ((((..((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))).))))))).)))))))).)))).------- ( -28.40, z-score = -1.43, R) >droVir3.scaffold_12723 5318461 111 + 5802038 --GGCUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCAUUUUGGGAAAACUUGAUACCAUU------- --((..((((((((....))))))))....((((((((....((((((((((....)))((.((.(((((......))))).))...))..))))))).)))))))).))...------- ( -27.30, z-score = -1.60, R) >droMoj3.scaffold_6500 3334967 111 + 32352404 --GGCUUUGUGGAACAAUUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUUGUUGGGAAAACUUGAUACCAUU------- --((..((((((((....))))))))....((((((((....(((((........((((((.((.(((((......))))).))...))))))))))).)))))))).))...------- ( -28.60, z-score = -1.59, R) >droGri2.scaffold_15252 13118670 111 + 17193109 --GGCUUUGUGGAACAAUUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUCUUUUUGGGAAAACUUGAUACCAUU------- --((..((((((((....))))))))....((((((((....(((((((.((....))(((.((.(((((......))))).))...))).))))))).)))))))).))...------- ( -27.10, z-score = -1.26, R) >consensus __GACUUUGUGGAACAAAUUUCGCAAUUGAAUCAAGUUGAGCUCCUAGAUCGAAAACGGGAAUGAGAGGCAAGUAAGCUUUACAGAAUC_UUUUGGGAAAACUUGAUACCAUU_______ ......((((((((....))))))))....((((((((....((((((((((....)))...((.(((((......))))).)).......))))))).))))))))............. (-25.26 = -25.34 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:38:03 2011