| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,481,084 – 13,481,179 |
| Length | 95 |
| Max. P | 0.826752 |
| Location | 13,481,084 – 13,481,179 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.87 |
| Shannon entropy | 0.35288 |
| G+C content | 0.35277 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -17.46 |
| Energy contribution | -17.58 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13481084 95 + 23011544 -----------GUUUAAGCUGU-----------AUUACGGCAGUCGUUUACAAUAAUUACAUUGCCUGGGGCGAGUGAUUGAUGACAUUUUAUAAUUGAAAGCAUAAGGUUAAACUA -----------((((((((((.-----------....)))).((((((......((((((.(((((...))))))))))))))))).......................)))))).. ( -22.10, z-score = -1.62, R) >droEre2.scaffold_4929 14673466 117 - 26641161 CCACGGUUUAAGUUUAAGCUGUGCUAUUGCACUAUUACAACAGCCAUUUACAACAAUUACCUUGCCUGUGGCGAGUGAUUGAUGACAUUUUAUAAUUGAAAGUAUAAGGUUAAACUA ....(((((((.((((.(((((((....))))..................((.(((((((.(((((...)))))))))))).))................))).)))).))))))). ( -29.30, z-score = -2.20, R) >droYak2.chr2L 9909557 106 + 22324452 -------CCUCGGCUGUGCUGUGUGGACU----ACUACAACAGACAGUUACAAUAAUUACCUCGCCUGUGGCGAGUGAUUGAUGACAUUUUAUAAUUGAAAGUAUAAGGUUAAACUA -------....((((((.((((((((...----.)))).)))))))))).((.(((((((.(((((...)))))))))))).))..((((((((........))))))))....... ( -29.30, z-score = -2.44, R) >droSec1.super_16 1626785 106 + 1878335 GUACGGUAAGAGUUUAAGCUGU-----------AUUACAGCAAUCGUUUACAAUAAUUACAUUGCCUGGGGCGAGUGAUUGAUGACAUUUUAUAAUUGAAAGUAUAAGGUUAAACUA ..........(((((..((((.-----------....))))((((...(((..(((((((.(((((...))))))))))))......(((((....))))))))...))))))))). ( -22.80, z-score = -1.29, R) >droSim1.chr2L 13263386 106 + 22036055 GUACGGUAAGAGUUUAAGCUGU-----------AUUCCAGCAAUCGUUUACAAUAAUUACAUUGCCUGGGGCGAGUGAUUGAUGACAUUUUAUAAUUGAAAGUAUAAGGUUAAACUA ..........(((((..((((.-----------....))))((((...(((..(((((((.(((((...))))))))))))......(((((....))))))))...))))))))). ( -21.90, z-score = -0.78, R) >consensus __ACGGUAAGAGUUUAAGCUGU___________AUUACAGCAGUCGUUUACAAUAAUUACAUUGCCUGGGGCGAGUGAUUGAUGACAUUUUAUAAUUGAAAGUAUAAGGUUAAACUA ...........((((((.((..............................((.(((((((.(((((...)))))))))))).))...(((((....))))).....)).)))))).. (-17.46 = -17.58 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:58 2011