| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,475,987 – 13,476,080 |
| Length | 93 |
| Max. P | 0.529263 |
| Location | 13,475,987 – 13,476,080 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.55 |
| Shannon entropy | 0.49835 |
| G+C content | 0.69259 |
| Mean single sequence MFE | -48.24 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.48 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13475987 93 - 23011544 AGGAGUCGAAGAGCAGCUCCUCGGGCCCGGGACGCCGCAGCUU---------------------------GGCCACGUGGCCGGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG .((..((((.(((...))).))))..))(..(((((...((((---------------------------((((....))))))))..((((((....)))))))))))..)........ ( -46.20, z-score = -1.34, R) >droSim1.chr2L 13258221 93 - 22036055 AGGAGUCGAAGAGGAGCUCCUCGGGCCCGGGACGCCGCAGCUU---------------------------GGCCACGUGGCCGGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG .((.(((...((((....)))).)))))(..(((((...((((---------------------------((((....))))))))..((((((....)))))))))))..)........ ( -49.50, z-score = -2.48, R) >droSec1.super_16 1621887 93 - 1878335 AGGAGUCGAAGAGGAGCUCUUCGGGUCCUGGACGCCGCAGCUU---------------------------AGCCACGUGGCCGGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG ((((.((((((((...)))))))).)))).(((((((..(((.---------------------------.(((.(((((((......))))))))))..)))))))))).......... ( -50.70, z-score = -3.89, R) >droYak2.chr2L 9904307 93 - 22324452 AGGACUCGAAGAGGAGCUCCUCGGGCCCGGGACGCCGCAGCUU---------------------------GGCCACGUGGCCCGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG .((.(((((.(((...))).))))).))(..(((((...(((.---------------------------((((....)))).)))..((((((....)))))))))))..)........ ( -46.00, z-score = -1.30, R) >droEre2.scaffold_4929 14668375 93 + 26641161 AGGACUCGAAGAGGAGCUCCUCGGGCCCGGGACGCCGCAGCUU---------------------------GGCCACGUGGCCUGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG .((.(((((.(((...))).))))).))(..((((((..(((.---------------------------.(((.((((((((....)))))))))))..)))))))))..)........ ( -46.60, z-score = -1.63, R) >droAna3.scaffold_12943 2180700 93 - 5039921 UGGACGUCUCCAGCAGCUCCUCUGGUCCCGGUCGCCGCAGCUU---------------------------GGCCACGUGGCCCGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG ....((((.((((.((...))))))....(..((((...(((.---------------------------((((....)))).)))..((((((....))))))))))...)...)))). ( -38.30, z-score = 0.95, R) >dp4.chr4_group1 3201693 90 + 5278887 ---CCGUUUCGGGCACCUCCUCUGGCCCGGGACGGCGCAGCUU---------------------------GGCCACGUGGCCGGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG ---((((..(((((..........)))))..))))(((.((((---------------------------((((....))))))))..((((((....)))))).)))............ ( -49.30, z-score = -2.02, R) >droPer1.super_5 3148421 90 - 6813705 ---CCGUUUCGGGCACCUCCUCUGGCCCGGGACGGCGCAGCUU---------------------------GGCCACGUGGCCCGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG ---((((..(((((..........)))))..))))(((.(((.---------------------------((((....)))).)))..((((((....)))))).)))............ ( -46.30, z-score = -1.12, R) >droVir3.scaffold_12723 5304531 96 + 5802038 ---AAUCAUGCGGCUCCUCGUUGUCGUCGGCGCGUCGCAGCUU---------------------CACAGCUGCGGCGUGACCCGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUCG ---.((((((..((.((......(((((((((((((((((((.---------------------...))))))))))))..)))))))((((((....)))))))).))..).))))).. ( -52.00, z-score = -3.37, R) >droMoj3.scaffold_6500 3320243 111 + 32352404 ---AGUCGUUGGGCUCGUCGUCGUCGUCGGCUCGCCGCAGCUUCA------CUGCGGCUGCUGCCGCUGCGGCGGCGUGCCCGGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUCG ---.((((((((((.(((((((((.(.((((..(((((((.....------)))))))....))))).))))))))).)))).((((.((((((....))))))..))))..)))))).. ( -65.20, z-score = -2.83, R) >droGri2.scaffold_15252 13104122 117 + 17193109 ---AAUCGUGCGGCUCCUCGUCAUCAUCAGCGCGUCGCAGCUUGACGACGGCAGCGGCUGCCUCCGCUGCCGCUGCAUGACCCGGCGAGGCCAUGGGCGUGGCUGGCGUUACAAUGAUCG ---..(((((((((...((((((.....(((........))))))))).((((((((......))))))))))))))))).(((((.(.(((...))).).))))).............. ( -54.50, z-score = -0.99, R) >droWil1.scaffold_180708 7306025 84 + 12563649 ---------CAAUGCCAUCUUCCAGACCCGGACGACGCAAUUU---------------------------GGCCACAUGGCCCGGCGAGGCCAUGGGUGUGGCCGGCGUUACAAUGAUGG ---------.....(((((.(((......))).(((((....(---------------------------((((((((((((......)))))....))))))))))))).....))))) ( -34.30, z-score = -1.32, R) >consensus ___ACUCGUAGAGCACCUCCUCGGGCCCGGGACGCCGCAGCUU___________________________GGCCACGUGGCCCGGCGAGGCCAUGGGCGUGGCCGGCGUUACAAUGAUGG ...............................(((((...................................(((.........)))..((((((....)))))))))))........... (-19.25 = -19.48 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:57 2011