| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,458,104 – 13,458,171 |
| Length | 67 |
| Max. P | 0.575348 |
| Location | 13,458,104 – 13,458,171 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 80.68 |
| Shannon entropy | 0.35396 |
| G+C content | 0.32447 |
| Mean single sequence MFE | -15.44 |
| Consensus MFE | -4.65 |
| Energy contribution | -4.98 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.28 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13458104 67 + 23011544 AAAAAAACACUUUUACUUGAUCAAGUAUACGACA-UGUGGCCGUCAGGC-----CAUAAGAAAUAUUAAAGUG .......(((((((((((....))))).......-(((((((....)))-----)))).........)))))) ( -18.00, z-score = -4.17, R) >droSim1.chr2L 13240364 67 + 22036055 AAAAAAACACUUUUACUUAAUCAAGUAUACGACA-UGUGGCCGUCAGGC-----CAUAAGGAAUAUUAAAGUG .......(((((((((((....))))).....(.-(((((((....)))-----)))).).......)))))) ( -17.20, z-score = -3.82, R) >droSec1.super_16 1604113 67 + 1878335 AAAAAAACAUUUUUACUUAAUCAAGUAUACGACA-UGUGGCCGUCAGGC-----CAUAAGGAAUAUUAAAGUG .......(((((((((((....))))).....(.-(((((((....)))-----)))).).......)))))) ( -14.90, z-score = -2.98, R) >droEre2.scaffold_4929 14650320 67 - 26641161 AAAAAAACACUUUUACUUAAUCAAGUAUACGACA-UGUGGCCGUCAGGC-----CAUAAGGAAUAUUAAAGUG .......(((((((((((....))))).....(.-(((((((....)))-----)))).).......)))))) ( -17.20, z-score = -3.82, R) >droYak2.chr2L 9885977 67 + 22324452 AAAAAAACACUUUUACUUAAUCAAGUAUACGACA-UGUGGCCGUCAGGC-----CAUAAGGAAUAUUUAAGUU ..............((((((....((((....(.-(((((((....)))-----)))).)..)))))))))). ( -13.80, z-score = -2.48, R) >droMoj3.scaffold_6500 3295798 73 - 32352404 AUAUUUAUAUUCGUGCAUAAUCAAGUGUUUGAGAACGUGUUUAUUUUACUCAAGCAUCAUAUAGAUUAUAGUA .............(((((((((..(((((((((...............)))))))))......)))))).))) ( -11.56, z-score = -0.80, R) >consensus AAAAAAACACUUUUACUUAAUCAAGUAUACGACA_UGUGGCCGUCAGGC_____CAUAAGGAAUAUUAAAGUG .......(((((((((((....)))))........(((((((....))).....)))).........)))))) ( -4.65 = -4.98 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:51 2011