| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,361,946 – 13,362,044 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 13,361,946 – 13,362,044 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 64.53 |
| Shannon entropy | 0.75052 |
| G+C content | 0.48255 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -4.93 |
| Energy contribution | -4.50 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 13361946 98 - 23011544 UUUACGUGCACUUAGGCGACGAUUGUACAUUAAGAUAUGACACAA--UCCCUAAGC--CAGUGCACAGCUGAUCCGCAUCCUCCCCCACUUUCAGUCCCAUU-------- .....(((((((..(((...((((((.(((......)))..))))--)).....))--)))))))).(((((...................)))))......-------- ( -24.51, z-score = -3.83, R) >droSim1.chr2L 13150097 98 - 22036055 UUUACGUGCACUUAGGCGACGAUUGUACAUUAAGAUAUGACGCAA--UCCCUGAGC--CAGUGCACAGCUGAUCCGCAUCCUCCCCCACUUUCAGUCCCAUU-------- .....(((((((..(((...((((((.(((......)))..))))--)).....))--)))))))).(((((...................)))))......-------- ( -24.81, z-score = -2.93, R) >droSec1.super_16 1520292 98 - 1878335 UUUACGUGCACUUAGGCGACGAUUGUACAUUAAGAUAUGACGCAA--UCCCUGAGC--CAGUGCACAGCUGAUCCGCAUCCUCCCCCACUUUCAGUCCCAUU-------- .....(((((((..(((...((((((.(((......)))..))))--)).....))--)))))))).(((((...................)))))......-------- ( -24.81, z-score = -2.93, R) >droYak2.chr2L 9800682 98 - 22324452 UUUAAGUGCACUUAGGCGACGAUUGUACAUUAAGAUAUGACGCAA--UCCGUGAAC--UAGUGCACAGCUGAUCCGCAUCCUCCCCCACUUUCAGUCCCAUU-------- .....(((((((.((...((((((((.(((......)))..))))--).)))...)--)))))))).(((((...................)))))......-------- ( -22.31, z-score = -1.99, R) >droEre2.scaffold_4929 14562115 97 + 26641161 UUUAAGUGCACUUAGGCGACGAUUGUACAUUAAGAUAUGACGCAA--UCCGUGAGC--CAGUGCACAGCUGAUCCGCAUCCU-CCCCACUUUCAGUCCCAUU-------- .....(((((((..(((.((((((((.(((......)))..))))--).)))..))--)))))))).(((((..........-........)))))......-------- ( -26.17, z-score = -3.00, R) >droAna3.scaffold_12943 2013579 102 - 5039921 UUUACGUGCACUUAGGCGACGAUUGUGCAUUAAGAUGUGACGUAAGAAAGUUCAUC--CAGUGCACAGCUGAUCCCCACAGCCUCCGCCGCCGUCCAGCCCCCU------ .......((.....((((.((..((((((((..((((.(((........)))))))--.))))))))((((.......))))...)).)))).....)).....------ ( -29.20, z-score = -2.71, R) >dp4.chr4_group1 3056166 104 + 5278887 UUUACGUGCACUUAGGCGACGAUUGUGCACUAAGAUAUGACGCAG--AAGUGGAGC--UAGUCCCCCAUCC--GCCCAUCCCCCCAGACACAGUCCAUCUUCACGGCGUU .....((((((...(....)....))))))........(((((.(--(((((((.(--(.(((........--.............)))..)))))).))))...))))) ( -25.70, z-score = -0.97, R) >droPer1.super_5 3020388 75 - 6813705 UUUACGUGCACUUAGGCGACGAUUGUGCACUAAGAUAUGACGCAG--AAGUGGAGC--UAGUC--CCAUCU--UCACAGCGUU--------------------------- .....((((((...(....)....))))))........(((((.(--((((((...--.....--))).))--))...)))))--------------------------- ( -22.30, z-score = -1.68, R) >droWil1.scaffold_180708 7151514 102 + 12563649 UUUACGUGCACUUAAGCGACGAUUGCACAUUAAGAUAUGACGCAA--AAGUUGAAU-GCGAUUUGCAGCUGAUUCUCAUUCCUUUUUCACCCCUUCAAUCACACU----- .....((((......)).))(((((..(((......)))..(.((--(((..((((-(.((.((......)).)).)))))))))).).......))))).....----- ( -13.80, z-score = 0.71, R) >droVir3.scaffold_12723 2404341 76 + 5802038 UUUACGUGCACUUAAGCGACGAUUGUGCAUUAAGAUAUGACGCAA--AACUUGCACCGCCUUCGCCGACUAAUGCUCC-------------------------------- .....(.(((.(((..((.(((..((((((......)))..(((.--....)))..)))..))).))..)))))).).-------------------------------- ( -13.70, z-score = -0.24, R) >droMoj3.scaffold_6500 25966854 88 + 32352404 UUUACGUGCACUUAAGCGACGAUUGUGCAUUAAGAUAUGACGCAA--AAGU----------UGCAGCACUG----CCACCACCUCCGCCUCCAUCUCGGACCCC------ .....((((......(((((..((((((((......))).)))))--..))----------))).))))..----........((((.........))))....------ ( -19.20, z-score = -1.30, R) >droGri2.scaffold_15126 67409 76 - 8399593 UUUACGUGCACUUAAGCGACGAUUGUGCAUUAAGAUAUGACGCAA--AAGUUGCACAGCCUUCUUUAUCUAAUGCUAA-------------------------------- ...............(((((..((((((((......))).)))))--..)))))..(((.((........)).)))..-------------------------------- ( -14.50, z-score = -0.14, R) >consensus UUUACGUGCACUUAGGCGACGAUUGUACAUUAAGAUAUGACGCAA__AACUUGAGC__CAGUGCACAGCUGAUCCGCAUCCUCCCCCACUUUCAGUCCCAUU________ .....((((((((((...((....))...)))))...)).)))................................................................... ( -4.93 = -4.50 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:41 2011