| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,361,830 – 13,361,891 |
| Length | 61 |
| Max. P | 0.821481 |
| Location | 13,361,830 – 13,361,891 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 69.39 |
| Shannon entropy | 0.56366 |
| G+C content | 0.40439 |
| Mean single sequence MFE | -15.61 |
| Consensus MFE | -6.66 |
| Energy contribution | -6.64 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13361830 61 + 23011544 ---UACUUUGUGAAGUU---GUCCCU--UGGAAAGGGUAUCCAC-UCUAUGCCCAAUUACGCAGAUGUAU-- ---(((((((((.((((---.(((..--.)))..((((((....-...)))))))))).)))))).))).-- ( -15.20, z-score = -1.54, R) >droAna3.scaffold_12943 2013467 63 + 5039921 GAUUAUUCAGAGCAGAU---UAUCCAAAUUUAAAGAGCAUC----UUUAUGCUCUAUUUCUGGGAUGUAU-- .....(((((((.((((---(.....)))))..(((((((.----...)))))))..)))))))......-- ( -12.80, z-score = -1.07, R) >droEre2.scaffold_4929 14561990 60 - 26641161 ---UACUUUGCAAAGUU---G-CCCG--UGGAAAGGGUAUCCAU-UCUAUGCCCAAUUACGCAGAUGUAU-- ---((((((((..((((---(-..((--(((((.((....)).)-))))))..)))))..))))).))).-- ( -17.90, z-score = -2.50, R) >droYak2.chr2L 9800557 60 + 22324452 ---UGCUUUGUAAAGUU---G-CCCA--UGGAAAGGGUAUACAU-UCUAUGCCCAAUUACACAGAUGUAU-- ---((((((((..((((---(-..((--(((((.(......).)-))))))..)))))..))))).))).-- ( -14.80, z-score = -1.33, R) >droSec1.super_16 1520176 61 + 1878335 ---UACUUUGUGAAGUU---GUCCCC--UGGAAAGGGUAUCCAU-UCUAUGCCCAAUUACGCAGAUGUAU-- ---(((((((((.((((---.(((..--.)))..((((((....-...)))))))))).)))))).))).-- ( -15.20, z-score = -1.64, R) >droSim1.chr2L 13149981 61 + 22036055 ---UACUUUGUAAAGUU---GUCCCC--UGGAAAGGGUACCCAU-UCUAUGCCCAAUUACGCAGAUGUAU-- ---((((((((..((((---(..(..--(((((.((....)).)-)))).)..)))))..))))).))).-- ( -13.50, z-score = -1.12, R) >droVir3.scaffold_12723 2404220 67 - 5802038 ---UGUUUUGUUAGAUUUUGGAUCCU--UUAAAAGGGUAUUCAAAAUCCCGCACAGCGACGGCAACUGGUCU ---.(((.(((..(((((((((((((--(....)))).))))))))))..))).)))((((....)..))). ( -19.90, z-score = -2.53, R) >consensus ___UACUUUGUAAAGUU___GUCCCA__UGGAAAGGGUAUCCAU_UCUAUGCCCAAUUACGCAGAUGUAU__ .....((.(((((..........((....))...((((((........))))))..))))).))........ ( -6.66 = -6.64 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:40 2011