| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,326,713 – 13,326,835 |
| Length | 122 |
| Max. P | 0.709731 |
| Location | 13,326,713 – 13,326,835 |
|---|---|
| Length | 122 |
| Sequences | 9 |
| Columns | 133 |
| Reading direction | forward |
| Mean pairwise identity | 72.08 |
| Shannon entropy | 0.56303 |
| G+C content | 0.45120 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -17.36 |
| Energy contribution | -16.20 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13326713 122 + 23011544 --GAGCACACUGCCUUGUGGGCCGUUAAGUGUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCACGAAUAAC-AACGGCGGGAAAAG---CGAUGCCAUCAAAUGAAACGAAAAGGUAGAGAGUAAUGC----- --..((.(.(((((((((((((((((...(((((((........))))))).)))).)).)))).......-...((((.......---...))))...............))))))).).)).....----- ( -30.40, z-score = -0.53, R) >droSim1.chr2L 13111922 123 + 22036055 --GAGCACACUGCCUGGUGGGCCGUUAAGUGUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCACGAAUAAC-AACGGCUGGAAAAGG--CGAUGCCAUCAAAUGGAACGAAAAGGUAGAGACUAAUGC----- --.......((((((..((..(((((..(((.(((...(((((.....))))).(((.(.(((((......-..))..)))...).)--)).))))))..)))))..))...))))))..........----- ( -30.80, z-score = -0.42, R) >droSec1.super_16 1485609 123 + 1878335 --GAGCACACUGCCUGGUGGGCCGUUAAGUGUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCACGAAUAAC-AACGGCCGGAAAAAG--CGAUGCCAUCAAAUGGAACGAAAAGGUAGAGACUAAUGC----- --.......((((((..((..(((((..(((.(((...(((((.....))))).(((...((.((......-..))...)).....)--)).))))))..)))))..))...))))))..........----- ( -29.50, z-score = -0.11, R) >droEre2.scaffold_4929 14526639 122 - 26641161 --GAGCACACUGCCUGGUGGGCCGUUAAGUGUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCACGAAUAAC-AACGGCGGGAAAAG---CGAUGCCAUUAAAUGGAACGCAAAGGUAGAGUCUAAUGC----- --.((.((.((((((.(((..(((((.((((.(((...(((((.....))))).(((.(.((.((......-..))..)).)...)---)).))))))).)))))..)))..)))))).)))).....----- ( -35.60, z-score = -1.25, R) >droYak2.chr2L 9763638 124 + 22324452 GAGGACACACUGCCUGGUGGGCCGUUAAGUGUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCACGAAUAAC-AACGGCGGGUAAAG---CAAUGCCAUUAAAUGGAACGCAAAGGUGGAGACUAAUGC----- .........(..(((.(((..(((((.((((.(((...(((((.....)))))..((.((((.((......-..))...))))..)---)..))))))).)))))..)))..)))..)..........----- ( -32.20, z-score = -0.14, R) >droAna3.scaffold_12943 1972225 130 + 5039921 --CUGCCUUCGUCCUGGUGUGCCCUUAAGUGUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCAGGCAUAAC-AACGGAGCGGACGCGGAUGCGGAGACCGAAUCCAUUAACUGAGACGCCAAAAAGGUACAGC --((((.((((((((((..(((.......(((((((........)))))))....)))..)))))......-.)))))))))..((((((.(((...))).))))............(((.....)))...)) ( -39.31, z-score = -1.10, R) >dp4.chr4_group5 188789 123 + 2436548 --GUGUGUCCUGCCUGGCGUGCCGUAAAGUAUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCAGGCAUAAC-AACAGCGAGAAAGAGAACCCAUUAAAUGAGG--AGCACAUGGGCGGACCCAAAUGU----- --((((((..((((((((((((.((....(((((((........)))))))..))))))))))))))..))-.................(((((...))).))--.)))).((((....)))).....----- ( -39.00, z-score = -2.47, R) >droPer1.super_5 4689506 123 + 6813705 --GUGUGUCCUGCCUGGCGUGCCGUAAAGUAUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCAGGCAUAAC-AACAGCGAGAAAGAGAACCCAUUAAAUGAGG--AGCACAUGGGCGGACCCAAAUGU----- --((((((..((((((((((((.((....(((((((........)))))))..))))))))))))))..))-.................(((((...))).))--.)))).((((....)))).....----- ( -39.00, z-score = -2.47, R) >droWil1.scaffold_180708 7056320 116 - 12563649 --CGUUUUUCUUGUUUCCCAGCCGUAAAGUAUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCAAGCAUUACGAACAAUGUGAAAAAA-ACAACAACAACAACAAGAAAGAGAGGCAAGC-------------- --..(((((((((((.....(((((....(((((((........)))))))....))).))...(((((......))))).......-...........))))))))))).........-------------- ( -22.70, z-score = -1.29, R) >consensus __GAGCACACUGCCUGGUGGGCCGUUAAGUGUGCAAUAUUUAUUUUGUAUAAAACGCGUGCCACGAAUAAC_AACGGCGGGAAAAAG__CGAUGCCAUCAAAUGGAACGAAAAGGUAGAGACUAAUGC_____ .........((((((((((.((.((....(((((((........)))))))..)))).))))............(.....)...............................))))))............... (-17.36 = -16.20 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:35 2011