| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,283,377 – 13,283,478 |
| Length | 101 |
| Max. P | 0.790282 |
| Location | 13,283,377 – 13,283,478 |
|---|---|
| Length | 101 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 67.84 |
| Shannon entropy | 0.65089 |
| G+C content | 0.31019 |
| Mean single sequence MFE | -15.23 |
| Consensus MFE | -5.15 |
| Energy contribution | -5.49 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790282 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 13283377 101 + 23011544 CUAUAAUUAUUUCUCAACG--CCA---UAGAAAUCAAUUAUAGCAACUCAACAGCAUCAUAAAGAAAUCGAAACGAAACUGAAU------AUUAAUCAGAUUGCUUGUUAUA-- ((((((((((((((.....--...---.)))))).))))))))......(((((((...........(((...)))..((((..------.....))))..))).))))...-- ( -15.10, z-score = -1.77, R) >droGri2.scaffold_14978 987706 93 - 1124632 CUAUAAUUAUUUCUCAAAAG-CCA---UAGAAAUCAAUUAUAGC-UGACAACAG-ACUAUACAGCAAAUACAGCGAUGC-------------AAUUAAAUGCACAUGUUUUU-- .(((((((((((((......-...---.)))))).)))))))((-((.......-......))))(((.(((..(.(((-------------(......))))).))).)))-- ( -13.12, z-score = -0.80, R) >droMoj3.scaffold_6500 6251653 82 + 32352404 CUAUAAUUAUUUCUCACAA--CCA---UAGAAAUCAAUUAUAGC-UGACAACAG-ACA--ACAGCAAA-----CGAUGC-------------AAUUUAAUGCACUUGUC----- .(((((((((((((.....--...---.)))))).)))))))((-((.......-...--.))))..(-----((((((-------------(......)))).)))).----- ( -14.10, z-score = -2.82, R) >droPer1.super_10 349030 89 - 3432795 CUAUAAUUAUUUCUCAAUG--CCA---UAGAAAUUUAUUAUAGCGCAACAA-AGCAGCAUCGAGAAAACAAAA-------------------CAAUCGCAAUGCUUGCUAUACG (((((((.((((((.....--...---.))))))..)))))))........-(((((((((((..........-------------------...)))..)))).))))..... ( -15.32, z-score = -1.46, R) >dp4.chr4_group4 2540494 89 - 6586962 CUAUAAUUAUUUCUCAAUG--CCA---UAGAAAUCUAUUAUAGCGCAACAA-AGCAGCAUCGAGAAAACAAAA-------------------UAAUCGCAAUGCUUGCUAUACG .........((((((.(((--(.(---(((....))))....((.......-.)).)))).))))))......-------------------.....(((.....)))...... ( -15.70, z-score = -1.51, R) >droAna3.scaffold_12943 1927507 95 + 5039921 CUAUAAUUAUUUCUCAACG--CCA---UAGAAAUCAAUUAUAGCAACUGAACA-CAGCAUACAGACAUCGAA-----ACUGAAA------CUCAAUCAGAAUGCUUGUUAUA-- ((((((((((((((.....--...---.)))))).))))))))......((((-.(((((...(....)...-----.((((..------.....)))).)))))))))...-- ( -16.10, z-score = -2.41, R) >droEre2.scaffold_4929 14482992 107 - 26641161 CUAUAAUUAUUUCUCAACG--CCA---UAGAAAUCAAUUAUAGCAACUCAACAGCAUCAUACAGAAAUCGAAACGAAACUGAAACUGAAAAUUAUUCAGAUUGCUUGUUAUA-- ((((((((((((((.....--...---.)))))).))))))))......(((((((.....(((...(((...)))..)))...(((((.....)))))..))).))))...-- ( -18.50, z-score = -2.67, R) >droYak2.chr2L 9720999 101 + 22324452 CUAUAAUUAUUUCUCAACG--CCA---UAGAAAUCAAUUAUAGCAACUCAACAGCAUCAUACAGAAAUCGAAACGAAACUGAAC------GUUAAUCAGAUUGCUUGUUAUA-- ((((((((((((((.....--...---.)))))).))))))))......(((((((...........(((...)))..((((..------.....))))..))).))))...-- ( -15.10, z-score = -1.58, R) >droSec1.super_16 1442774 101 + 1878335 CUAUAAUUAUUUCUCAACG--CCA---UAGAAAUCAAUUAUAGCAACUCAACAGCAUCAUACAGAAAUCGAAACGAAACUGAAU------AUUAAUCAGAUUGCUUGUUAUA-- ((((((((((((((.....--...---.)))))).))))))))......(((((((...........(((...)))..((((..------.....))))..))).))))...-- ( -15.10, z-score = -1.79, R) >droSim1.chr2L 13069734 101 + 22036055 CUAUAAUUAUUUCUCAACG--CCA---UAGAAAUCAAUUAUAGCAACUCAACAGCAUCAUACAGAAAUCGAAACGAAACUGAAU------AUUAAUCAGAUUGCUUGUUAUA-- ((((((((((((((.....--...---.)))))).))))))))......(((((((...........(((...)))..((((..------.....))))..))).))))...-- ( -15.10, z-score = -1.79, R) >triCas2.ChLG5 562267 95 + 18847211 AUUUAAUUGCAGAUUAAGCUUCUAGUUUAUAAACCGAACGUAA--AUCCAAGAGAAUUCUGCAUCGAACAGUAUAA-----------------AAUUGAGGCUUAUAUUUAAUA ..........((((((((((((...((((((...(((..((((--((.(....).))).))).))).....)))))-----------------)...)))))))).)))).... ( -14.30, z-score = -0.50, R) >consensus CUAUAAUUAUUUCUCAACG__CCA___UAGAAAUCAAUUAUAGCAACUCAACAGCAUCAUACAGAAAUCGAAACGAAACUGAA________UUAAUCAGAUUGCUUGUUAUA__ ((((((((((((((..............)))))).))))))))....................................................................... ( -5.15 = -5.49 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:31 2011