| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,261,570 – 13,261,668 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 13,261,570 – 13,261,668 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.83 |
| Shannon entropy | 0.37906 |
| G+C content | 0.42523 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -11.28 |
| Energy contribution | -11.83 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 13261570 98 - 23011544 UAUGUAUUUCAAGUUCAACUUCAGAACACUUUUACACACCGCCUACACACAGCCGCCAGUCGGAAG-AAAUCGCGAUAUUUAGAUUUG---------GUCGUAGGCGU ..((((......((((.......)))).....))))...(((((((.......(((...((....)-)....))).......(((...---------)))))))))). ( -23.30, z-score = -2.12, R) >droSim1.chr2L 13045552 98 - 22036055 UCUGUAUUUCAAGUUCAACUUCAGAACACUUUUACACACCGCCUACACACAGCCGCCAGUCGGAAG-AAAUCGCGAUAUUUAGAUUUG---------GUCGUAGGCGU ..((((......((((.......)))).....))))...(((((((.......(((...((....)-)....))).......(((...---------)))))))))). ( -23.10, z-score = -1.85, R) >droSec1.super_16 1420931 98 - 1878335 UCUGUAUUUCAAGUUCAGCUUCAGAACACUUUUACACACCGCCUACACACAGCCGCCAGUCGGAAG-AAAUCGCGAUAUUUAGAUUUG---------GUCGUAGGCGU ..((((......((((.......)))).....))))...(((((((.......(((...((....)-)....))).......(((...---------)))))))))). ( -23.10, z-score = -1.52, R) >droYak2.chr2L 9698809 97 - 22324452 UUUGUAUUUCAAGUUCAACUUCAAAACACUUUUACACCACGCCUACACACAGCCGCCAGUCGGAAG-AAAUCGCGAUA-UUAGAUUUG---------GUCGUAGGCGU ..(((.(((.(((.....))).))))))..........((((((((.......(((...((....)-)....)))...-...(((...---------))))))))))) ( -21.50, z-score = -1.74, R) >droEre2.scaffold_4929 14461169 98 + 26641161 UCCGUAUUUCAAGUUCAACUUCAAAACACUUUAACACCACGCCUACACACAGCCGCCAGUCGGAAG-AAAUCGCGAUAUUUAGAUUUU---------GUCGUAGGCGU ...((.(((.(((.....))).)))))...........((((((((........((...((....)-)....))((((.........)---------))))))))))) ( -21.40, z-score = -2.25, R) >droAna3.scaffold_12943 1905795 108 - 5039921 UAUGUAUUUCAAGUUGAACUCUAAAACACUUCUAUACACCGCCCACGCACAGCCACCGGAGGAAAAUGAAUCGAUUUCUUUUGAAUUAUUUUUUUUAGCCGUAGGCGU ..(((((...((((.............))))..))))).((((.(((....((.....(((((((((((.((((......)))).))))))))))).))))).)))). ( -21.12, z-score = -1.25, R) >dp4.chr4_group4 2516962 104 + 6586962 UUUGUAUUUCAAGUCCAACUUU-GAAUCACUUUACACACCGCCUCCACAGAGCAGCCAGAAGGAAG-AAAUCGGUUUCUUUUUAUUUAUUUUUCU--GUCGUAGGCGA ...((..((((((......)))-)))..)).........((((((.((((((........((((((-(((....)))))))))........))))--)).).))))). ( -23.19, z-score = -1.99, R) >droPer1.super_10 325614 105 + 3432795 UUUGUAUUUCAAGUCCAACUUUGGAAUCACUUUACACACCGCCUCCACAGAGCAGCCAGAAGGAAG-AAAUCGGUUUCUUUUUAUUUAUUUUUCU--GUCGUAGGCGA ..((((.......((((....)))).......))))...((((((.((((((........((((((-(((....)))))))))........))))--)).).))))). ( -25.53, z-score = -2.31, R) >consensus UCUGUAUUUCAAGUUCAACUUCAGAACACUUUUACACACCGCCUACACACAGCCGCCAGUCGGAAG_AAAUCGCGAUAUUUAGAUUUG_________GUCGUAGGCGU .......................................(((((((((.......((....))....(((((..........)))))..........)).))))))). (-11.28 = -11.83 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:30 2011