| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,251,845 – 13,251,939 |
| Length | 94 |
| Max. P | 0.623181 |
| Location | 13,251,845 – 13,251,939 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 69.24 |
| Shannon entropy | 0.55450 |
| G+C content | 0.55674 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -13.99 |
| Energy contribution | -13.79 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13251845 94 + 23011544 UGGCUCAGAAGCGAUCGGCACUUCGAGCCAAAAAGACGGUCCUGUCCGUCUAACGCACGAGUACUUUCAAGUCCAGAAUCGAGUGCCGCGAUCC-------------- ((((((.((((.(.....).))))))))))...((((((......))))))..(((..(.((((((((.......))...))))))))))....-------------- ( -29.70, z-score = -1.40, R) >droSim1.chr2L 13036040 94 + 22036055 UGGCUCAGAAGCGAUCGGCACUUCGAGCCAAAAAGACGGUCCUGUCCGUCUAACGCACGAGUACUUCCAAGUCCAGAAUCGAGUGCCGCGAUUC-------------- ((((((.((((.(.....).))))))))))...((((((......))))))..(((..(.((((((..............))))))))))....-------------- ( -29.14, z-score = -1.22, R) >droSec1.super_16 1411464 94 + 1878335 UGGCUCAGAAGCGAUCGGCACUUCGAGCCAAAAAGACGGUCCUGUCCGUCUAACGCACGAGUACUUCCAAGUCCAGAAUCGAGUGCCGCGAUCC-------------- ((((((.((((.(.....).))))))))))...((((((......))))))..(((..(.((((((..............))))))))))....-------------- ( -29.14, z-score = -1.31, R) >droYak2.chr2L 9688980 107 + 22324452 UGGCUCAGAAGCAAUCGGACCUUCGAGCCAAAAAGACGGUCCUGUCCGUCUAACGUACGAGUACUU-GAAGUCAAGAAUCGAGUACCGAGUAUCGACUACCGCGAUCC ((((((.((((.........))))))))))...((((((......))))))..(((.((.((((((-((.........))))))))))(((....)))...))).... ( -33.50, z-score = -2.03, R) >droEre2.scaffold_4929 14451387 100 - 26641161 UGGCUCAGAAGCGAUCGGAGCUUCGAGCCAAAAAGACGGUCCUGUCCGUCUAACGCACGAGUACUU-CAAGUCAAGAUUCCAGUACCGCGUACCGCGAUCC------- ((((((.(((((.......)))))))))))...((((((......))))))..((((((.(((((.-..(((....)))..)))))..)))...)))....------- ( -34.70, z-score = -2.73, R) >droAna3.scaffold_12943 1896426 82 + 5039921 CGUCUCAGAAGCGAUCGGACCUCACAGCCCAUCAGACGGUCCUGUCUGUCUAACGUACGAGAA-UCGGGAAUCCAAAGAAACG------------------------- ..((((......(((.(((((((...........)).))))).))).(((....).)))))).-..((....)).........------------------------- ( -17.00, z-score = 0.97, R) >dp4.chr4_group4 2506540 71 - 6586962 UGGCUCAGAAGCGAUCGGACCUUACUACCCAGCAGACGGUCCUGCCUGUCUAACGCACGAGA---CCGAAACCG---------------------------------- .(((((....(((...((..........))...((((((......))))))..)))..))).---)).......---------------------------------- ( -15.50, z-score = 0.22, R) >droPer1.super_10 315061 71 - 3432795 UGGCUCAGAAGCGAUCGGACCUUACUACCCAGCAGACGGUCCUGCCUGUCUAACGCACGAGA---CCGAAACCG---------------------------------- .(((((....(((...((..........))...((((((......))))))..)))..))).---)).......---------------------------------- ( -15.50, z-score = 0.22, R) >consensus UGGCUCAGAAGCGAUCGGACCUUCGAGCCAAAAAGACGGUCCUGUCCGUCUAACGCACGAGUACUUCCAAGUCCAGAAUCGAGU_CCGCG___C______________ ..((((....(((...((.........))....((((((......))))))..)))..)))).............................................. (-13.99 = -13.79 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:29 2011