| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,244,465 – 13,244,534 |
| Length | 69 |
| Max. P | 0.974281 |
| Location | 13,244,465 – 13,244,534 |
|---|---|
| Length | 69 |
| Sequences | 14 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 86.99 |
| Shannon entropy | 0.29996 |
| G+C content | 0.35094 |
| Mean single sequence MFE | -16.41 |
| Consensus MFE | -12.18 |
| Energy contribution | -11.88 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13244465 69 + 23011544 UAACAUUUGUUG-----UCCUCCAAUGGAGG-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -18.20, z-score = -2.96, R) >droSim1.chr2L 13028433 69 + 22036055 UAACAUUUGUUG-----UCCUCCAAUGGAGG-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -18.20, z-score = -2.96, R) >droSec1.super_16 1403915 69 + 1878335 UAACAUUUGUUG-----UCCUCCAAUGGAGG-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -18.20, z-score = -2.96, R) >droPer1.super_5 4606924 69 + 6813705 UAACAUUUGUUG-----UUCUCCAAUGGAGA-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -15.80, z-score = -2.40, R) >dp4.chr4_group4 4126481 69 + 6586962 UAACAUUUGUUG-----UUCUCCAAUGGAGA-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -15.80, z-score = -2.40, R) >droAna3.scaffold_12943 1887964 69 + 5039921 UAACAUUUGUUG-----UCCUCCAAUGGAGG-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -18.20, z-score = -2.96, R) >droYak2.chr2L 9681042 66 + 22324452 UAUCAUUUGUUG-----UCCUCCAACGGAGG-AACUAUCAGAUGUUAAGCUGAAAAGUUGAG---UUAUAAGUUG ...((((((...-----((((((...)))))-).....))))))...((((....))))...---.......... ( -16.50, z-score = -2.46, R) >droEre2.scaffold_4929 14444081 69 - 26641161 UAACAUUUGUUG-----UCCUCCAAUGGAGG-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -18.20, z-score = -2.96, R) >droWil1.scaffold_180708 442588 69 - 12563649 UAACAUUUGUUG-----UUCUCCAAUGGAGA-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -15.80, z-score = -2.40, R) >droVir3.scaffold_12963 18745593 69 - 20206255 UAACAUUUGUUG-----UUCUCCAAUGGAGA-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -15.80, z-score = -2.40, R) >droMoj3.scaffold_6500 28276957 69 + 32352404 UAACAUUUGUUG-----UUCUCCAAUGGAGA-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -15.80, z-score = -2.40, R) >droGri2.scaffold_15126 7043990 69 + 8399593 UAACAUUUGUUG-----UUCUCCAAUGGAGA-AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((...-----((((((...)))))-).....)))))))))..(((.......)))............. ( -15.80, z-score = -2.40, R) >anoGam1.chr3R 11141010 69 + 53272125 UAACAUUUGUUG-----UCUCCCUAUGGGAG-AGCUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG ....(((((((.-----((((((...)))))-)..((((((........))))))..)))))))........... ( -18.10, z-score = -2.46, R) >triCas2.chrUn_14 216512 72 + 349816 AAAGAUUUGUUAAAAUUCGUCCCGGCAGAGGUAAAGAUCGGGUAC--AGUUAAAAAACACUCAC-UUAAUUUUCG ...((...(((((.....((((((((.........).))))).))--.(((....)))......-)))))..)). ( -9.30, z-score = 0.37, R) >consensus UAACAUUUGUUG_____UCCUCCAAUGGAGG_AACUAUCAGAUGUUAAGCUGAUAAGAACAGAUACUACACUUUG (((((((((.........(((((...))))).......)))))))))............................ (-12.18 = -11.88 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:27 2011