| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,202,083 – 13,202,202 |
| Length | 119 |
| Max. P | 0.542573 |
| Location | 13,202,083 – 13,202,202 |
|---|---|
| Length | 119 |
| Sequences | 8 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 67.81 |
| Shannon entropy | 0.67608 |
| G+C content | 0.56754 |
| Mean single sequence MFE | -41.72 |
| Consensus MFE | -16.41 |
| Energy contribution | -18.71 |
| Covariance contribution | 2.30 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13202083 119 - 23011544 UGUGAGAUCAUAGUAGCUACCCAGGGAGUGGCAUGCGAGCAGGAGUUCGCCAGGGCCAUCAUGAUGGCCGGAAACGGUAC-CGGUGC-AUUGCUGGGCUUGCUGUCCGAGGAGAGUGAUGC ......(((((..((((..(((((.((...((((((((((....))))))..(((((((....)))))((....))...)-).))))-.)).)))))...))))((....))..))))).. ( -44.20, z-score = -0.78, R) >droSim1.chr2L 12996502 119 - 22036055 UGUGAGAUCAUAGUAGCCACCCAGGGAGUGGCAUGCGAGCAGGAGUUCGCCAGGGCCAUCAUGAUGGCCGGAAACGGUAC-CGGAGC-AUUGCUGGGCUUGCUGCCCGAGGAGAGUGAUGC ......(((((.(((((((((....).))))).))).(((((..(((((((..((((((....))))))(....))))..-..))))-.)))))((((.....)))).......))))).. ( -46.60, z-score = -1.32, R) >droSec1.super_16 1356636 119 - 1878335 UGUGAGAUCAUAGUAGCUACCCAGGGAGUGCCAUGCGAGCAGGAGUUCGCCAGGGCCAUCAUGAUGGCCGGAAACGGUGC-CGGAGC-AUUGCUGGGCUUGCUGCCCGAGGAGAGUGAUGC ......(((((.(((((..(((((.((((.((..((((((....))))))...((((((....)))((((....))))))-))).))-.)).)))))...)))))(....)...))))).. ( -45.70, z-score = -0.79, R) >droYak2.chr2L 9625763 119 - 22324452 UGUGAAAUCAUAGUAGCUACCCAGGGAGUGGCAUGCGAGCAGGAGUUCGCCAGGGCCAUCCUCAUGGCCGAAAACGGUAC-CGGAGC-AUUGCUGGGUUUGCUGCCCGAGGAAAGAGAUGC ((((....))))(((((.((((((.(((((((..((((((....))))))....))))).(((...((((....))))..-..))).-.)).))))))..)))))................ ( -43.70, z-score = -1.17, R) >droEre2.scaffold_4929 14403052 119 + 26641161 UGUGAGAUCAUAGUAGCUACCCAGGGUGUUGCAUGCGAGCAAGAGUUCACCAGGGCCAUCCUGAUGUCCGGAAACGGUAC-CGGACA-AUUGCUGGGUUUGCUGCCUGAAGAGAGUGUUGC ((((....))))(((((.(((((((((.(((...(.((((....)))).)))).))).......(((((((........)-))))))-....))))))..)))))................ ( -40.20, z-score = -0.85, R) >droAna3.scaffold_12916 10852180 119 - 16180835 UGUGAGAUCCUCGUCGCCACGCAAGGAGUGGCUAACGAACAGGAGUUCGCUAGGGCCAUACUGAUGGCCGGCAAUGGAGG-UGGAAC-GCUUCUGGGUCUGCUGCCCGACGAAAGGAAUCC .....(((((((((((((.(((.....))).(((.(((((....))))).)))((((((....)))))))))...(((((-((...)-))))))((((.....)))))))))..)).))). ( -45.30, z-score = -1.21, R) >droWil1.scaffold_180708 392611 111 + 12563649 UGCGAGAUCAUAGUAACCACUCAUGGUGUUGCUAAUGAGCAGGAAAUGGCUAGAGCAUUCCUAAUGUCCAGCAAUGGAAU-UGCACCUGGAUCUGGACCAGCUUCUGCAAUG--------- .((((.((((((((....))).))))).))))......((((((..((((((((............((((....))))..-..........))))).)))..))))))....--------- ( -35.95, z-score = -1.68, R) >droGri2.scaffold_15252 4041267 92 - 17193109 UGCGAGAUCAUUGUGGCUGCCCAUGGCGGCCACCCGGAGCAGGAAAUC----GAACGUUCCUAUCUAUUGGGACUGCAGCAUGUGCCGAGCAACGA------------------------- (((.((((....(((((((((...)))))))))..(((((........----....))))).)))).((((.((........)).)))))))....------------------------- ( -32.10, z-score = -0.70, R) >consensus UGUGAGAUCAUAGUAGCUACCCAGGGAGUGGCAUGCGAGCAGGAGUUCGCCAGGGCCAUCCUGAUGGCCGGAAACGGUAC_CGGAGC_AUUGCUGGGCUUGCUGCCCGAGGAGAGUGAUGC ............(((((..(((((.(((((((...(((((....))))).....))))).......((((....))))...........)).)))))...)))))................ (-16.41 = -18.71 + 2.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:16 2011