| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,196,133 – 13,196,184 |
| Length | 51 |
| Max. P | 0.561261 |
| Location | 13,196,133 – 13,196,184 |
|---|---|
| Length | 51 |
| Sequences | 8 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 72.60 |
| Shannon entropy | 0.55978 |
| G+C content | 0.58025 |
| Mean single sequence MFE | -16.71 |
| Consensus MFE | -8.94 |
| Energy contribution | -9.44 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.58 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13196133 51 + 23011544 GCGGUCAUGCAGCGACGGA---AACAACCUCUGCGUGUUCGCGUCAUGCAGAUG (((..(((((((.(..(..---..)...).)))))))..)))(((.....))). ( -18.20, z-score = -1.22, R) >droSim1.chr2L 12990519 51 + 22036055 GCGGUCAUGCAGCGGCGGA---AACAACCUCUGCGUGUUCGCGUCAUGCAGAUG (((..(((((((.((.(..---..)..)).)))))))..)))(((.....))). ( -21.50, z-score = -2.13, R) >droSec1.super_16 1350658 51 + 1878335 UCGGUCAUGCAGCGGCGGA---AACAACCUCUGCGUGUUCGCGUCAUGCAGAUG .((..(((((((.((.(..---..)..)).)))))))..))((((.....)))) ( -18.00, z-score = -1.28, R) >droYak2.chr2L 9619752 51 + 22324452 GCGGUUAUGCAGCGACGGA---AACAGCCUCUGCGUGUUCGCGUCAUGCAGAUG (((..(((((((.(.((..---..).).).)))))))..)))(((.....))). ( -17.00, z-score = -0.52, R) >droEre2.scaffold_4929 14396929 51 - 26641161 GCGGUUAUGCAGCGCCGGA---AACAGCCUCUGCGUGUUCGCGUCAUGCAGAUG (((..(((((((.((.(..---..).))..)))))))..)))(((.....))). ( -19.60, z-score = -1.31, R) >droAna3.scaffold_12916 10846410 51 + 16180835 GCAAUAAUGAAGAGGAGAA---AGAGCCCGCUCCGCGUUCGCGUCAUGCAGAUG (((..........((((..---.(....).))))((....))....)))..... ( -10.10, z-score = 0.41, R) >droWil1.scaffold_180708 385553 54 - 12563649 ACGGCCAUGCAAAGAAGGCCGCAAACGCCGCUGCGUGUCCGUAUCAUGCAGAUG .(((((..........))))).........(((((((.......)))))))... ( -17.70, z-score = -0.81, R) >anoGam1.chr3R 17217402 50 + 53272125 AAGGCGAUCAAAGAGCAGC----CCUCCCUUGAGGUAAUUGCUUCGAGCACAUG ..(((..((...))...))----)....((((((((....))))))))...... ( -11.60, z-score = -0.38, R) >consensus GCGGUCAUGCAGCGGCGGA___AACAACCUCUGCGUGUUCGCGUCAUGCAGAUG ((((.(((((((.(..............).))))))).))))............ ( -8.94 = -9.44 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:15 2011