| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,152,040 – 13,152,145 |
| Length | 105 |
| Max. P | 0.810852 |
| Location | 13,152,040 – 13,152,145 |
|---|---|
| Length | 105 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 69.45 |
| Shannon entropy | 0.60807 |
| G+C content | 0.47343 |
| Mean single sequence MFE | -26.21 |
| Consensus MFE | -10.99 |
| Energy contribution | -11.90 |
| Covariance contribution | 0.91 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13152040 105 - 23011544 --UGAACAACUUUCGAAAACACCUCCGUCAAGUGGCGGAAUGUUUUCCACUUUUGUUAGUCAACCUGGCAA--CGGCUUU--UCCGCCCACUGCCCUCCACGUACUUAGAU- --..(((((.....(((((((..((((((....)))))).))))))).....))))).........((((.--.(((...--...)))...))))................- ( -27.30, z-score = -2.20, R) >droEre2.scaffold_4929 14352944 105 + 26641161 --UGAACAACUUUCGAAAACACCUCCGUCAAGUGGCGGAAUGUUUUCCACUUUUGUUAGUCAACUUGGCUA--CGGCUUU--UCCGCCCACUGCCCUCCACUUACUUAGGU- --............(((((((..((((((....)))))).))))))).((((..((.(((......(((..--.(((...--...)))....)))....))).))..))))- ( -27.90, z-score = -2.20, R) >droYak2.chr2L 9575501 105 - 22324452 --UGAACAACUUUCGAAAACACCUCCGUCAAGUGGCGGAAUGUUUUCCACUUUUGUUAGUCAGCCUGGCUA--CGGCUUU--UCCGCCCACUGCCCUCCACGUACUUAGGU- --..(((((.....(((((((..((((((....)))))).))))))).....))))).....((((((.((--((((...--...)))...((.....)).))).))))))- ( -27.50, z-score = -1.22, R) >droSec1.super_16 1307077 107 - 1878335 --UGAACAACUUUCGAAAACACCUCCGUCAAGUGGCGGAAUGUUUUCCACUUUUGUUAGUCAACCUGGCAA-CCGGCUUU--UCCGCCCACUGCCCUCCGCGUACUUAGAAU --..(((((.....(((((((..((((((....)))))).))))))).....))))).........((((.-..(((...--...)))...))))................. ( -27.60, z-score = -1.84, R) >droSim1.chr2L 12946264 107 - 22036055 --UGAACAACUUUCGAAAACACCUCCGUCAAGUGGCGGAAUGUUUUCCACUUUUGUUAGUCAACCUGGCAA-ACGGCUUU--UCCGCCCACUGCCCUCCGCGUACUUAGAAU --..(((((.....(((((((..((((((....)))))).))))))).....))))).........((((.-..(((...--...)))...))))................. ( -27.60, z-score = -1.83, R) >dp4.chr4_group4 864217 94 - 6586962 --UGAAGAACUUUGGAAAACACCUCUGCCAAGUGGCGGCAUGUUUUUCAGUUUUGUU--UCCACUUGGCGA--CAGCUCCAGUUCGCCAGCCACUCCACU------------ --.((((....((((((((((...(((((....)))))..)))))))))).....))--))...(((((((--..((....)))))))))..........------------ ( -27.20, z-score = -1.28, R) >droPer1.super_46 393001 94 + 590583 --UGAAGAACUUUGGAAAACACCUCUGCCAAGUGGCGGCAUGUUUUUCAGUUUUGUU--UCCACUUGGCGA--CAGCUCCAGUUCGCCAGCCACUCCACU------------ --.((((....((((((((((...(((((....)))))..)))))))))).....))--))...(((((((--..((....)))))))))..........------------ ( -27.20, z-score = -1.28, R) >droMoj3.scaffold_6500 26216191 109 - 32352404 GAUUUGUUAAAAUAAAUAAUAAACAUGCAGAAUGAACGAAAUGAACGCACUGUUGUCUCAAUACUUAGCAGGUCAACACC--UGUGAUGCUUACAUCUCAUUUAGUAACCU- ..(((((((.......)))))))..(((.((((((......((((((......))).))).......((((((....)))--)))((((....)))))))))).)))....- ( -17.40, z-score = -0.18, R) >consensus __UGAACAACUUUCGAAAACACCUCCGUCAAGUGGCGGAAUGUUUUCCACUUUUGUUAGUCAACCUGGCAA__CGGCUUU__UCCGCCCACUGCCCUCCACGUACUUAGAU_ ....(((((.....(((((((...(((((....)))))..))))))).....))))).........(((................)))........................ (-10.99 = -11.90 + 0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:07 2011